miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 95894 0.65 0.448422
Target:  5'- --uCCUGUacuGGCCCCgGUUCCggacucuguacugGCCCCg -3'
miRNA:   3'- cacGGACA---CCGGGGgCGGGGa------------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 16255 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 111342 0.66 0.443354
Target:  5'- -cGCC-GUGGCCCUcaucuccuccauCGCCaCgCUGCaCCCc -3'
miRNA:   3'- caCGGaCACCGGGG------------GCGG-G-GACG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 25489 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 50618 0.66 0.443354
Target:  5'- -aGCgUGaccGGCUCCUGaugagaCCCUGCUCCa -3'
miRNA:   3'- caCGgACa--CCGGGGGCg-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 13177 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 19333 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 46753 0.66 0.443354
Target:  5'- -gGCCaG-GGUCCUCGCCuCCcGaCCCCg -3'
miRNA:   3'- caCGGaCaCCGGGGGCGG-GGaC-GGGG- -5'
29153 5' -67.3 NC_006146.1 + 22411 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 28567 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 105722 0.66 0.443354
Target:  5'- -cGCCUagGGCUCCaagaGCCCCaagaGCUCCa -3'
miRNA:   3'- caCGGAcaCCGGGGg---CGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 125742 0.66 0.443354
Target:  5'- -cGCCgauccgaGGCCUCCGUCCCacccaGCCCg -3'
miRNA:   3'- caCGGaca----CCGGGGGCGGGGa----CGGGg -5'
29153 5' -67.3 NC_006146.1 + 120148 0.66 0.43498
Target:  5'- -aGCgaGgacgaggacGGCCCCCuucccgacGCCCCgucGCCCCc -3'
miRNA:   3'- caCGgaCa--------CCGGGGG--------CGGGGa--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 138948 0.66 0.43498
Target:  5'- -gGCCUaaccUGGCCCUgGCuuuggCCUUGCCCUu -3'
miRNA:   3'- caCGGAc---ACCGGGGgCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 113597 0.66 0.43498
Target:  5'- -gGCCggGUcGCCagucucUCCGUCgCCUGCCCCg -3'
miRNA:   3'- caCGGa-CAcCGG------GGGCGG-GGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 98699 0.66 0.43498
Target:  5'- -gGCCgcUGGUCuCCCGCCCauccgGCCgCCg -3'
miRNA:   3'- caCGGacACCGG-GGGCGGGga---CGG-GG- -5'
29153 5' -67.3 NC_006146.1 + 38265 0.66 0.427522
Target:  5'- uGUGCCUGgaacaucuggagcgGGCCacacugCCGgCCCUuuccaucuuucccaGCCCCa -3'
miRNA:   3'- -CACGGACa-------------CCGGg-----GGCgGGGA--------------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 103851 0.66 0.426698
Target:  5'- -gGCagagGUGGUCUCCGUCCCgGCCg- -3'
miRNA:   3'- caCGga--CACCGGGGGCGGGGaCGGgg -5'
29153 5' -67.3 NC_006146.1 + 41771 0.66 0.426698
Target:  5'- -cGCCgGaGGCCCUgCGCCCggGCgCCCg -3'
miRNA:   3'- caCGGaCaCCGGGG-GCGGGgaCG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 106259 0.66 0.426698
Target:  5'- cGUGCCccUGGCCCCgGCggaagacauccUCCUGgCCUg -3'
miRNA:   3'- -CACGGacACCGGGGgCG-----------GGGACgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.