miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 128658 0.66 0.978698
Target:  5'- gCUCCucgcgccgGAGGGGGuCGuUGGCa -3'
miRNA:   3'- -GAGGuuuuuucaCUCCCCCcGC-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 122754 0.66 0.978466
Target:  5'- -cCCuacGAGGGGUacGAGcGGGGGC-UGGCc -3'
miRNA:   3'- gaGGu--UUUUUCA--CUC-CCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 168547 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 91178 0.66 0.978466
Target:  5'- ---uGAAGGAGaUGAGGGuGcGGCGgGGCa -3'
miRNA:   3'- gaggUUUUUUC-ACUCCC-C-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 167615 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 169479 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 170410 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 33569 0.66 0.97776
Target:  5'- cCUCCGGGGGucgccgcguucgcuGGUccgguuuGGGuGGGCGUGGUc -3'
miRNA:   3'- -GAGGUUUUU--------------UCAcu-----CCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 127831 0.66 0.977037
Target:  5'- cCUCCAGccuccccugGAGGGuGGGCuugGGCa -3'
miRNA:   3'- -GAGGUUuuuuca---CUCCC-CCCGca-CCG- -5'
29154 3' -53.4 NC_006146.1 + 125615 0.66 0.976047
Target:  5'- uUCCAccGAGGGUGGGGcauGGGC-UGGUg -3'
miRNA:   3'- gAGGUu-UUUUCACUCCc--CCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 54370 0.66 0.976047
Target:  5'- ---gAAAAGAGUGAGGuGGGCcagacgauggGUGGUg -3'
miRNA:   3'- gaggUUUUUUCACUCCcCCCG----------CACCG- -5'
29154 3' -53.4 NC_006146.1 + 45024 0.66 0.976047
Target:  5'- gUCCcucGAGAGUGAGGgagagaggccGGGGCc-GGCu -3'
miRNA:   3'- gAGGuu-UUUUCACUCC----------CCCCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 169574 0.66 0.975284
Target:  5'- -cCCGGGGcccgagcgcgcgucGGGUGGGgccugaGGGGGCGcGGCg -3'
miRNA:   3'- gaGGUUUU--------------UUCACUC------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 167709 0.66 0.975284
Target:  5'- -cCCGGGGcccgagcgcgcgucGGGUGGGgccugaGGGGGCGcGGCg -3'
miRNA:   3'- gaGGUUUU--------------UUCACUC------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 116322 0.66 0.973434
Target:  5'- uCUCCccAAGAGgagGAGGGGGaaGgcGGCg -3'
miRNA:   3'- -GAGGuuUUUUCa--CUCCCCCcgCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 128184 0.66 0.970621
Target:  5'- -gCCGGGAGGcGgcccAGGGGGGCGccgcGGCg -3'
miRNA:   3'- gaGGUUUUUU-Cac--UCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 162103 0.66 0.970621
Target:  5'- uUCCGcgguugGGAAAGUGugcacuGGGGGGCcgucccacgGUGGg -3'
miRNA:   3'- gAGGU------UUUUUCACu-----CCCCCCG---------CACCg -5'
29154 3' -53.4 NC_006146.1 + 26255 0.66 0.970621
Target:  5'- -gCCA--GAGGUGGGGGcacGG-GUGGCg -3'
miRNA:   3'- gaGGUuuUUUCACUCCCc--CCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33827 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 21335 0.66 0.967601
Target:  5'- uUCCAAGAGucauucucgGAGGGGcugccGGCG-GGCu -3'
miRNA:   3'- gAGGUUUUUuca------CUCCCC-----CCGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.