miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 3' -59 NC_001493.1 + 3034 0.66 0.801601
Target:  5'- -gGCCGcGGgGAUGGCaUCCUC-GACCu -3'
miRNA:   3'- cgUGGCaCCaCUGCCG-GGGAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 118589 0.66 0.801601
Target:  5'- -gGCCGcGGgGAUGGCaUCCUC-GACCu -3'
miRNA:   3'- cgUGGCaCCaCUGCCG-GGGAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 24358 0.66 0.792804
Target:  5'- cGCGCUGUGG-GAuUGGUaCC-CGGGCCu -3'
miRNA:   3'- -CGUGGCACCaCU-GCCGgGGaGUCUGG- -5'
2917 3' -59 NC_001493.1 + 129112 0.66 0.792804
Target:  5'- cGgACCGcGGUGGagaGGCCCg--AGACCg -3'
miRNA:   3'- -CgUGGCaCCACUg--CCGGGgagUCUGG- -5'
2917 3' -59 NC_001493.1 + 107296 0.66 0.792804
Target:  5'- cGCGCCGUGGaacUGA--GCCUC-CAGGCg -3'
miRNA:   3'- -CGUGGCACC---ACUgcCGGGGaGUCUGg -5'
2917 3' -59 NC_001493.1 + 13558 0.66 0.792804
Target:  5'- cGgACCGcGGUGGagaGGCCCg--AGACCg -3'
miRNA:   3'- -CgUGGCaCCACUg--CCGGGgagUCUGG- -5'
2917 3' -59 NC_001493.1 + 69663 0.66 0.783868
Target:  5'- gGCGCgGUGGUGGaaaaGGUCCggaUgAGACUc -3'
miRNA:   3'- -CGUGgCACCACUg---CCGGGg--AgUCUGG- -5'
2917 3' -59 NC_001493.1 + 96376 0.66 0.774802
Target:  5'- uCACCGUcGGUGAUGGUacuaCCCgUC-GACUa -3'
miRNA:   3'- cGUGGCA-CCACUGCCG----GGG-AGuCUGG- -5'
2917 3' -59 NC_001493.1 + 63755 0.66 0.774802
Target:  5'- uCACCGcGGUGucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCaCCACu---GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63800 0.66 0.774802
Target:  5'- uCACCGcGGUGucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCaCCACu---GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 30940 0.66 0.774802
Target:  5'- -gGCCGcGGUGACGGCgcggucggcggCCUUCAcGuCCg -3'
miRNA:   3'- cgUGGCaCCACUGCCG-----------GGGAGU-CuGG- -5'
2917 3' -59 NC_001493.1 + 62465 0.66 0.774802
Target:  5'- uGC-CCGUGcccGUGGcCGGCUCCcgCGGGCUu -3'
miRNA:   3'- -CGuGGCAC---CACU-GCCGGGGa-GUCUGG- -5'
2917 3' -59 NC_001493.1 + 99351 0.66 0.765614
Target:  5'- uCACCGUGaGcGACGGacaCCUCGGuuCCa -3'
miRNA:   3'- cGUGGCAC-CaCUGCCgg-GGAGUCu-GG- -5'
2917 3' -59 NC_001493.1 + 119198 0.66 0.756314
Target:  5'- cGCACa--GG-GGCGcGCUCCUCGGGCg -3'
miRNA:   3'- -CGUGgcaCCaCUGC-CGGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 3644 0.66 0.756314
Target:  5'- cGCACa--GG-GGCGcGCUCCUCGGGCg -3'
miRNA:   3'- -CGUGgcaCCaCUGC-CGGGGAGUCUGg -5'
2917 3' -59 NC_001493.1 + 14158 0.66 0.756314
Target:  5'- cGCGCCccgGGUGACGa--CCUCGuGACCc -3'
miRNA:   3'- -CGUGGca-CCACUGCcggGGAGU-CUGG- -5'
2917 3' -59 NC_001493.1 + 129713 0.66 0.756314
Target:  5'- cGCGCCccgGGUGACGa--CCUCGuGACCc -3'
miRNA:   3'- -CGUGGca-CCACUGCcggGGAGU-CUGG- -5'
2917 3' -59 NC_001493.1 + 16245 0.67 0.746907
Target:  5'- -aGCCccGG-GACGGCCCCguacucGACCa -3'
miRNA:   3'- cgUGGcaCCaCUGCCGGGGagu---CUGG- -5'
2917 3' -59 NC_001493.1 + 131799 0.67 0.746907
Target:  5'- -aGCCccGG-GACGGCCCCguacucGACCa -3'
miRNA:   3'- cgUGGcaCCaCUGCCGGGGagu---CUGG- -5'
2917 3' -59 NC_001493.1 + 58839 0.67 0.744066
Target:  5'- uCACCGcGG-GACGGaaCCCCUucggugucgucccgCGGGCCg -3'
miRNA:   3'- cGUGGCaCCaCUGCC--GGGGA--------------GUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.