miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 180386 0.67 0.908004
Target:  5'- gGCCGCCaACAGCAcguGC-GCUGCGGGa- -3'
miRNA:   3'- gUGGUGG-UGUCGU---UGuCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 178573 0.66 0.948794
Target:  5'- aCAUCugCACaacgacuuguGGCAGCcggAGCCaGCAAGCc -3'
miRNA:   3'- -GUGGugGUG----------UCGUUG---UCGG-CGUUCGc -5'
29170 5' -56 NC_006150.1 + 175951 0.69 0.828676
Target:  5'- gCACCAugguccgcagUCACAGCAcaccucguaacACAGuCCGCAGGUa -3'
miRNA:   3'- -GUGGU----------GGUGUCGU-----------UGUC-GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 174658 0.66 0.948794
Target:  5'- gCGCCACUucuggcguuACGcCAGCcGCCGCAGGUa -3'
miRNA:   3'- -GUGGUGG---------UGUcGUUGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 174062 0.67 0.919593
Target:  5'- -gUUugCGaGGCAcacGCGGCCGCGAGCa -3'
miRNA:   3'- guGGugGUgUCGU---UGUCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 170284 0.66 0.930254
Target:  5'- aGCCugCACgccGGUAucgGC-GCCGCGAGCc -3'
miRNA:   3'- gUGGugGUG---UCGU---UGuCGGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 170002 0.74 0.572626
Target:  5'- uCGCCACCAUAGCGcgucucacccacauaGCGGCuCGC-GGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGU---------------UGUCG-GCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 169176 0.69 0.836884
Target:  5'- aCACCgaACCACuAGCAcCAGCCcUAGGCa -3'
miRNA:   3'- -GUGG--UGGUG-UCGUuGUCGGcGUUCGc -5'
29170 5' -56 NC_006150.1 + 167580 0.68 0.8821
Target:  5'- aCAUCACCGCGGCGGCuGGCgGaCcAGUGu -3'
miRNA:   3'- -GUGGUGGUGUCGUUG-UCGgC-GuUCGC- -5'
29170 5' -56 NC_006150.1 + 167131 0.69 0.836884
Target:  5'- uGCCucguuACCACAGgGugAGCCGUAcuGGUGa -3'
miRNA:   3'- gUGG-----UGGUGUCgUugUCGGCGU--UCGC- -5'
29170 5' -56 NC_006150.1 + 165274 0.68 0.867837
Target:  5'- aUACCACCACuGcCAACAGCacuGCuacGGUGa -3'
miRNA:   3'- -GUGGUGGUGuC-GUUGUCGg--CGu--UCGC- -5'
29170 5' -56 NC_006150.1 + 160150 0.66 0.944504
Target:  5'- aUACUAcCCACGGUGcUGGCCGCcAGUGg -3'
miRNA:   3'- -GUGGU-GGUGUCGUuGUCGGCGuUCGC- -5'
29170 5' -56 NC_006150.1 + 157632 0.71 0.699207
Target:  5'- gCACCACCcucaGCAGCAAUAGCaGCcccAGCa -3'
miRNA:   3'- -GUGGUGG----UGUCGUUGUCGgCGu--UCGc -5'
29170 5' -56 NC_006150.1 + 157589 0.67 0.908004
Target:  5'- cCACCACaC-CAGCGGCAGCaccaguaGCAccaAGCc -3'
miRNA:   3'- -GUGGUG-GuGUCGUUGUCGg------CGU---UCGc -5'
29170 5' -56 NC_006150.1 + 154568 0.73 0.62892
Target:  5'- uCACUugCugAGCGaugagcacgGCGGCCGCGAGgGc -3'
miRNA:   3'- -GUGGugGugUCGU---------UGUCGGCGUUCgC- -5'
29170 5' -56 NC_006150.1 + 154434 0.73 0.638007
Target:  5'- aUACCACCAgcgacacCAGC-ACAGCUGCAaccAGCa -3'
miRNA:   3'- -GUGGUGGU-------GUCGuUGUCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 152769 0.66 0.925039
Target:  5'- cCACCGCCAUccaaauccaAGuCAGC-GCCGCGuguGGCa -3'
miRNA:   3'- -GUGGUGGUG---------UC-GUUGuCGGCGU---UCGc -5'
29170 5' -56 NC_006150.1 + 152477 0.67 0.913914
Target:  5'- aCGCuCugCGCGGCggUGGCCGaaAAGCa -3'
miRNA:   3'- -GUG-GugGUGUCGuuGUCGGCg-UUCGc -5'
29170 5' -56 NC_006150.1 + 152302 0.69 0.820295
Target:  5'- gAgCGCCAaggcCAGCAGCAccaCCGCAGGCa -3'
miRNA:   3'- gUgGUGGU----GUCGUUGUc--GGCGUUCGc -5'
29170 5' -56 NC_006150.1 + 150046 0.73 0.62791
Target:  5'- gCACCGCCACuugggcuGGCAAguGUugaGCGAGCGa -3'
miRNA:   3'- -GUGGUGGUG-------UCGUUguCGg--CGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.