miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29188 5' -58.8 NC_006150.1 + 130726 0.66 0.868194
Target:  5'- cGCAccGCCGCaGCCAUagCCGccugacGCAUCCAg -3'
miRNA:   3'- -UGU--CGGCGcCGGUAagGGU------UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 219436 0.66 0.868194
Target:  5'- -uGGUCGCGGgCGUUCCCaAACAUa-- -3'
miRNA:   3'- ugUCGGCGCCgGUAAGGG-UUGUGggu -5'
29188 5' -58.8 NC_006150.1 + 167434 0.66 0.860914
Target:  5'- uGCAGCaCGCGGgauggaacacgaCCAcgcUUUCCAGCACgCAu -3'
miRNA:   3'- -UGUCG-GCGCC------------GGU---AAGGGUUGUGgGU- -5'
29188 5' -58.8 NC_006150.1 + 2131 0.66 0.845781
Target:  5'- gUAGCCGCGaCCGUacagaacaUCCCAGcCGCCg- -3'
miRNA:   3'- uGUCGGCGCcGGUA--------AGGGUU-GUGGgu -5'
29188 5' -58.8 NC_006150.1 + 175770 0.66 0.845781
Target:  5'- -aGGCUGC-GCCAUUCCaCAugACUCu -3'
miRNA:   3'- ugUCGGCGcCGGUAAGG-GUugUGGGu -5'
29188 5' -58.8 NC_006150.1 + 25130 0.66 0.83794
Target:  5'- aGCuGCCGCaGCU-UUCUCAugguaACACCCAa -3'
miRNA:   3'- -UGuCGGCGcCGGuAAGGGU-----UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 140201 0.67 0.820912
Target:  5'- cGCGGCCuucauucguGCGGCCAUccacaagUCCacgGAgACCCAc -3'
miRNA:   3'- -UGUCGG---------CGCCGGUA-------AGGg--UUgUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 39671 0.67 0.804895
Target:  5'- gUAGCCGUGGCagauguUUCCCgAAUGCUCGa -3'
miRNA:   3'- uGUCGGCGCCGgu----AAGGG-UUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 174048 0.67 0.803178
Target:  5'- cGCGGCCGCGaGCacgaaccgugUCCCGcaaaACCCAu -3'
miRNA:   3'- -UGUCGGCGC-CGgua-------AGGGUug--UGGGU- -5'
29188 5' -58.8 NC_006150.1 + 81405 0.68 0.778553
Target:  5'- -uGGgCGCGGCCAUUCaugggCAGgACCCc -3'
miRNA:   3'- ugUCgGCGCCGGUAAGg----GUUgUGGGu -5'
29188 5' -58.8 NC_006150.1 + 87883 0.68 0.769516
Target:  5'- cAUAGCCGUGGCUug-CaCAcuGCGCCCAc -3'
miRNA:   3'- -UGUCGGCGCCGGuaaGgGU--UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 590 0.68 0.768606
Target:  5'- uCAGCgcuCGCGGCCAcaccgUCuacaccgCCGGCGCCCGg -3'
miRNA:   3'- uGUCG---GCGCCGGUa----AG-------GGUUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 180595 0.68 0.760365
Target:  5'- gGCGcCCGCaGCCGgugUCUUGACGCCCGa -3'
miRNA:   3'- -UGUcGGCGcCGGUa--AGGGUUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 220048 0.68 0.760365
Target:  5'- cCAGCgUGUGGCCAUUUacagaaagguagCCAACGCuCCAc -3'
miRNA:   3'- uGUCG-GCGCCGGUAAG------------GGUUGUG-GGU- -5'
29188 5' -58.8 NC_006150.1 + 150159 0.68 0.760365
Target:  5'- cGCA-CCGUGGCCGgcUUCCaGAgACCCAu -3'
miRNA:   3'- -UGUcGGCGCCGGU--AAGGgUUgUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 147602 0.68 0.760365
Target:  5'- uCGGCCGCGGCUuuugCCguGC-CCCu -3'
miRNA:   3'- uGUCGGCGCCGGuaa-GGguUGuGGGu -5'
29188 5' -58.8 NC_006150.1 + 119031 0.68 0.751108
Target:  5'- gGC-GCCGCuGGCCAcgCgCGGCACCUg -3'
miRNA:   3'- -UGuCGGCG-CCGGUaaGgGUUGUGGGu -5'
29188 5' -58.8 NC_006150.1 + 109114 0.68 0.732309
Target:  5'- aACAGCCagaauCGGCCGccgagagCCAACGCCCGc -3'
miRNA:   3'- -UGUCGGc----GCCGGUaag----GGUUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 88627 0.69 0.713186
Target:  5'- cGCAGCCGCccgggacgaggaGGCCA---CCAGCGCCa- -3'
miRNA:   3'- -UGUCGGCG------------CCGGUaagGGUUGUGGgu -5'
29188 5' -58.8 NC_006150.1 + 197069 0.69 0.713186
Target:  5'- cCAGCCcUGaGCCugcuuAUUCCCAACGCCUg -3'
miRNA:   3'- uGUCGGcGC-CGG-----UAAGGGUUGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.