miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 5' -52 NC_006150.1 + 3043 0.66 0.995927
Target:  5'- aCGCAGCAGugGagCGC-UCAgCAgcaggaggAGGCa -3'
miRNA:   3'- -GCGUCGUUugUa-GCGcAGUgGU--------UCCG- -5'
29195 5' -52 NC_006150.1 + 109184 0.66 0.995927
Target:  5'- -cCAGCGGGCuguGUUGCGUgCAgaCGAGGCg -3'
miRNA:   3'- gcGUCGUUUG---UAGCGCA-GUg-GUUCCG- -5'
29195 5' -52 NC_006150.1 + 106615 0.66 0.995927
Target:  5'- aGCGGCcucGAGCGUCGCGcccucUCAagcguCCuuGGCa -3'
miRNA:   3'- gCGUCG---UUUGUAGCGC-----AGU-----GGuuCCG- -5'
29195 5' -52 NC_006150.1 + 82166 0.66 0.995864
Target:  5'- aGCuGCu-GCGUCGCcugugcggaguGUCACCGguagccugccaagAGGCg -3'
miRNA:   3'- gCGuCGuuUGUAGCG-----------CAGUGGU-------------UCCG- -5'
29195 5' -52 NC_006150.1 + 88724 0.66 0.99567
Target:  5'- gGCAGCcggcugccuacccGACGUCGgagCGCUAGGGCg -3'
miRNA:   3'- gCGUCGu------------UUGUAGCgcaGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 10233 0.66 0.99526
Target:  5'- uGcCAGCGAugacaacgaucGCAUgGCGggcaCACCGAGGa -3'
miRNA:   3'- gC-GUCGUU-----------UGUAgCGCa---GUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 182019 0.66 0.99526
Target:  5'- uGCAGCuAGCccUCGCGcCACCAu-GCu -3'
miRNA:   3'- gCGUCGuUUGu-AGCGCaGUGGUucCG- -5'
29195 5' -52 NC_006150.1 + 181216 0.66 0.994507
Target:  5'- uGCGGCGuGCAccCGUGcCACUGAGcGCg -3'
miRNA:   3'- gCGUCGUuUGUa-GCGCaGUGGUUC-CG- -5'
29195 5' -52 NC_006150.1 + 160520 0.66 0.994507
Target:  5'- aGgAGCcauGCAcUGCGUCAUCAAuuGGCa -3'
miRNA:   3'- gCgUCGuu-UGUaGCGCAGUGGUU--CCG- -5'
29195 5' -52 NC_006150.1 + 217330 0.66 0.993661
Target:  5'- aCGCGuauuuccaacuGCGGugG-CGCaGUCGCCAAGaGCg -3'
miRNA:   3'- -GCGU-----------CGUUugUaGCG-CAGUGGUUC-CG- -5'
29195 5' -52 NC_006150.1 + 173 0.66 0.993661
Target:  5'- aGCAGCAgGGCcgCaGUGaCACCGcGGCa -3'
miRNA:   3'- gCGUCGU-UUGuaG-CGCaGUGGUuCCG- -5'
29195 5' -52 NC_006150.1 + 119770 0.66 0.993661
Target:  5'- aCGCcGCGAACGcgcucCGCGUCcACCGGcugcgucuGGCa -3'
miRNA:   3'- -GCGuCGUUUGUa----GCGCAG-UGGUU--------CCG- -5'
29195 5' -52 NC_006150.1 + 59385 0.66 0.992712
Target:  5'- gGCAGUAAaguucuGCAUCGuCGccugcgCACCAuuGGCu -3'
miRNA:   3'- gCGUCGUU------UGUAGC-GCa-----GUGGUu-CCG- -5'
29195 5' -52 NC_006150.1 + 123821 0.66 0.992712
Target:  5'- gCGCAGCAcacaugcuGACGUCG-GUCAUCAAc-- -3'
miRNA:   3'- -GCGUCGU--------UUGUAGCgCAGUGGUUccg -5'
29195 5' -52 NC_006150.1 + 36188 0.66 0.992712
Target:  5'- uGCAGCAGA----GUGUgGCCAGGGa -3'
miRNA:   3'- gCGUCGUUUguagCGCAgUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 170969 0.66 0.992712
Target:  5'- aGCAGCGGugAUCGUGcCGCagagacuguGGUg -3'
miRNA:   3'- gCGUCGUUugUAGCGCaGUGguu------CCG- -5'
29195 5' -52 NC_006150.1 + 92375 0.67 0.991655
Target:  5'- gGCGGUggggauucGGGCgaGUCGCG-CACCGGcGGCg -3'
miRNA:   3'- gCGUCG--------UUUG--UAGCGCaGUGGUU-CCG- -5'
29195 5' -52 NC_006150.1 + 180855 0.67 0.991655
Target:  5'- aGCGGCGucGGCGUCGC-UCGgaCAGGGg -3'
miRNA:   3'- gCGUCGU--UUGUAGCGcAGUg-GUUCCg -5'
29195 5' -52 NC_006150.1 + 113358 0.67 0.991655
Target:  5'- gGCAgGCAGACGUCGagaccucCGCC-GGGCu -3'
miRNA:   3'- gCGU-CGUUUGUAGCgca----GUGGuUCCG- -5'
29195 5' -52 NC_006150.1 + 152324 0.67 0.991655
Target:  5'- gGCuGCuguugauCGUCGCcacgagCGCCAAGGCc -3'
miRNA:   3'- gCGuCGuuu----GUAGCGca----GUGGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.