miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 4432 0.66 0.999985
Target:  5'- cGAuuUUCUGAGGCGCAGGGuccUCAUUCa -3'
miRNA:   3'- -CUcgAGGAUUUCGCGUUUUu--AGUGGG- -5'
29219 5' -47 NC_006150.1 + 26905 0.66 0.999985
Target:  5'- cGAGCagCCUGGAacauCGUAGAcGUCugCCg -3'
miRNA:   3'- -CUCGa-GGAUUUc---GCGUUUuUAGugGG- -5'
29219 5' -47 NC_006150.1 + 126669 0.66 0.99998
Target:  5'- cGAGUgugCCUAGauGGCGUcgggAGGGAUCACUUc -3'
miRNA:   3'- -CUCGa--GGAUU--UCGCG----UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 139357 0.66 0.999979
Target:  5'- cGGUUCgcAAGGCGCAAGAAguggccuUCaACCCg -3'
miRNA:   3'- cUCGAGgaUUUCGCGUUUUU-------AG-UGGG- -5'
29219 5' -47 NC_006150.1 + 216304 0.66 0.999976
Target:  5'- aGGCgac--GAGCGCGAcacggcggcauuucgGAGUCGCCCg -3'
miRNA:   3'- cUCGaggauUUCGCGUU---------------UUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 204979 0.66 0.999972
Target:  5'- uAGCUCCcuucGAGCGCGAAGagcgucGUCAgCg -3'
miRNA:   3'- cUCGAGGau--UUCGCGUUUU------UAGUgGg -5'
29219 5' -47 NC_006150.1 + 39777 0.66 0.999972
Target:  5'- cGGGCgcggcagaaUCUGAAGCGCGAAug-CAUCUg -3'
miRNA:   3'- -CUCGa--------GGAUUUCGCGUUUuuaGUGGG- -5'
29219 5' -47 NC_006150.1 + 164883 0.66 0.999972
Target:  5'- cAGCUCagaaaUGAAGgGCAAuuguguguAUCACUCg -3'
miRNA:   3'- cUCGAGg----AUUUCgCGUUuu------UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 168715 0.66 0.999969
Target:  5'- uAGCUCCUcgauAGCGguGAAuagaugcaacacCACCCa -3'
miRNA:   3'- cUCGAGGAuu--UCGCguUUUua----------GUGGG- -5'
29219 5' -47 NC_006150.1 + 115994 0.66 0.999963
Target:  5'- aGAGC-CCgac-GCGCAGAcAUUugCCu -3'
miRNA:   3'- -CUCGaGGauuuCGCGUUUuUAGugGG- -5'
29219 5' -47 NC_006150.1 + 149247 0.66 0.999963
Target:  5'- cGGGCgugcgUCUGGAGggaGCAGGAGUaucaACCCg -3'
miRNA:   3'- -CUCGa----GGAUUUCg--CGUUUUUAg---UGGG- -5'
29219 5' -47 NC_006150.1 + 151361 0.66 0.999963
Target:  5'- gGAcUUCCUAAaucaacuagGGCGCu---AUCACCCu -3'
miRNA:   3'- -CUcGAGGAUU---------UCGCGuuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 146667 0.67 0.99995
Target:  5'- --uCUCUaaugGAAGCGUAG--GUCGCCCg -3'
miRNA:   3'- cucGAGGa---UUUCGCGUUuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 26511 0.67 0.99995
Target:  5'- -cGUUCCUGGAGacuguCGUuuucGGUCGCCCa -3'
miRNA:   3'- cuCGAGGAUUUC-----GCGuuu-UUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 38208 0.67 0.99995
Target:  5'- aGAGCUCgUAAAGCGUgu-GAcgAUCCa -3'
miRNA:   3'- -CUCGAGgAUUUCGCGuuuUUagUGGG- -5'
29219 5' -47 NC_006150.1 + 148722 0.67 0.99995
Target:  5'- uGGCUCC-AGGGCGCcu---UCuCCCg -3'
miRNA:   3'- cUCGAGGaUUUCGCGuuuuuAGuGGG- -5'
29219 5' -47 NC_006150.1 + 141832 0.67 0.99995
Target:  5'- aGAGCUCCUGAuaGGCcCGGuuGUUAaCCa -3'
miRNA:   3'- -CUCGAGGAUU--UCGcGUUuuUAGUgGG- -5'
29219 5' -47 NC_006150.1 + 153924 0.67 0.99995
Target:  5'- cAGCUCCguguacuuGUGaau-GAUCACCCa -3'
miRNA:   3'- cUCGAGGauuu----CGCguuuUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 83313 0.67 0.99995
Target:  5'- aAGaUCCUucAGGCGCAgggcGAAAUCAgCCg -3'
miRNA:   3'- cUCgAGGAu-UUCGCGU----UUUUAGUgGG- -5'
29219 5' -47 NC_006150.1 + 128603 0.67 0.999912
Target:  5'- -cGCUCCUGGAucCGCGAAgcgGAUUcCCCg -3'
miRNA:   3'- cuCGAGGAUUUc-GCGUUU---UUAGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.