miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 128678 0.65 0.887283
Target:  5'- cCCCCUGaugacguuuugcggUCGCUAuCGCGACUACCCUc- -3'
miRNA:   3'- -GGGGGU--------------GGUGGU-GUGCUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 161028 0.66 0.88264
Target:  5'- aCgCCUACCGCCcauuaacgucAUAgGACCGCCCc-- -3'
miRNA:   3'- -GgGGGUGGUGG----------UGUgCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 73915 0.66 0.88264
Target:  5'- uUCCCACCGgcaaCACACGugUuuggacauuucGCCCUAc -3'
miRNA:   3'- gGGGGUGGUg---GUGUGCugG-----------UGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 24967 0.66 0.88264
Target:  5'- cCCCCCugC-CUACugGgACCAauUCCUGc -3'
miRNA:   3'- -GGGGGugGuGGUGugC-UGGU--GGGAUu -5'
29231 3' -58.8 NC_006150.1 + 182624 0.66 0.875834
Target:  5'- cCCCCCACCccuucGCCuCGCugccACUACCCg-- -3'
miRNA:   3'- -GGGGGUGG-----UGGuGUGc---UGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 220028 0.66 0.868828
Target:  5'- gCCCgCCucggacguuCCACC-CGCGGCCACgCCa-- -3'
miRNA:   3'- -GGG-GGu--------GGUGGuGUGCUGGUG-GGauu -5'
29231 3' -58.8 NC_006150.1 + 128994 0.66 0.868828
Target:  5'- aUCCCACCgACCGCGgCGgaacACCAUCCg-- -3'
miRNA:   3'- gGGGGUGG-UGGUGU-GC----UGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 117552 0.66 0.861627
Target:  5'- -aCCCACUACCGuacuauUAUGGCUAUCCUGc -3'
miRNA:   3'- ggGGGUGGUGGU------GUGCUGGUGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 91948 0.66 0.861627
Target:  5'- --aCCACuUugUACACGGCCugCCUGu -3'
miRNA:   3'- gggGGUG-GugGUGUGCUGGugGGAUu -5'
29231 3' -58.8 NC_006150.1 + 88140 0.66 0.861627
Target:  5'- aCCCCACCccGCCGCG-GGCUggAUCCUGc -3'
miRNA:   3'- gGGGGUGG--UGGUGUgCUGG--UGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 27579 0.66 0.861627
Target:  5'- -aCCCAgCACCuCGgaGACCACCCa-- -3'
miRNA:   3'- ggGGGUgGUGGuGUg-CUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 88444 0.66 0.857214
Target:  5'- gCCCCCagaggGCCGCCcagaagggcgggggcGCGCGGCCcaggaGCCCc-- -3'
miRNA:   3'- -GGGGG-----UGGUGG---------------UGUGCUGG-----UGGGauu -5'
29231 3' -58.8 NC_006150.1 + 198151 0.66 0.854235
Target:  5'- aCCUCCGCgGCC-CACcACCGUCCUAGg -3'
miRNA:   3'- -GGGGGUGgUGGuGUGcUGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 181872 0.67 0.846659
Target:  5'- gCUCCGCCAgCGCACucGCUACCUUGc -3'
miRNA:   3'- gGGGGUGGUgGUGUGc-UGGUGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 118794 0.67 0.846659
Target:  5'- aCCCCGCCACguauguCACGGCC-UCCg-- -3'
miRNA:   3'- gGGGGUGGUGgu----GUGCUGGuGGGauu -5'
29231 3' -58.8 NC_006150.1 + 149077 0.67 0.846659
Target:  5'- gCCgCUGCCGCCACA--ACCGuCCCUGu -3'
miRNA:   3'- -GGgGGUGGUGGUGUgcUGGU-GGGAUu -5'
29231 3' -58.8 NC_006150.1 + 75821 0.67 0.846659
Target:  5'- gUCaaaCACCACCACGgGAUCACUgUAAa -3'
miRNA:   3'- gGGg--GUGGUGGUGUgCUGGUGGgAUU- -5'
29231 3' -58.8 NC_006150.1 + 107261 0.67 0.846659
Target:  5'- gCCaguaCCACCguuucgGCCGCGCGACCACg---- -3'
miRNA:   3'- -GGg---GGUGG------UGGUGUGCUGGUGggauu -5'
29231 3' -58.8 NC_006150.1 + 133220 0.67 0.822883
Target:  5'- aCCCCCuuuucaagGCCACCcugaaACGCGGaCGCCCg-- -3'
miRNA:   3'- -GGGGG--------UGGUGG-----UGUGCUgGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 182571 0.67 0.822883
Target:  5'- uCUCCUACCAacCCuCACGGCCACUUg-- -3'
miRNA:   3'- -GGGGGUGGU--GGuGUGCUGGUGGGauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.