miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 119784 0.66 0.955302
Target:  5'- aGAGCGcGCcaaagACGCCGCG-AACGcGCuCCg -3'
miRNA:   3'- aUUCGC-CG-----UGCGGCGCaUUGUcUG-GG- -5'
29283 5' -56 NC_006150.1 + 114059 0.66 0.955302
Target:  5'- cUGAGCGGCucgaGCUGC--AGCAGAgUCg -3'
miRNA:   3'- -AUUCGCCGug--CGGCGcaUUGUCUgGG- -5'
29283 5' -56 NC_006150.1 + 62342 0.66 0.951407
Target:  5'- -uGGCGGaUACGgaccgaUGCGUGcgcaACAGGCCCc -3'
miRNA:   3'- auUCGCC-GUGCg-----GCGCAU----UGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 202882 0.66 0.951407
Target:  5'- --cGUGGCACgcugaaagacaaGCCGCucaGGCGGACCg -3'
miRNA:   3'- auuCGCCGUG------------CGGCGca-UUGUCUGGg -5'
29283 5' -56 NC_006150.1 + 82498 0.66 0.951407
Target:  5'- gGAGCuGGUGCGCCagaacCGUAcACAGACUUc -3'
miRNA:   3'- aUUCG-CCGUGCGGc----GCAU-UGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 214659 0.66 0.951407
Target:  5'- cGAGCGcaccGCcaGCGCCGUGggGCcuACCCg -3'
miRNA:   3'- aUUCGC----CG--UGCGGCGCauUGucUGGG- -5'
29283 5' -56 NC_006150.1 + 106623 0.66 0.951005
Target:  5'- cGAGCGuCGCGCCcucucaaGCGUccuuGGCAcuGGCCCa -3'
miRNA:   3'- aUUCGCcGUGCGG-------CGCA----UUGU--CUGGG- -5'
29283 5' -56 NC_006150.1 + 181095 0.66 0.947291
Target:  5'- cGAGCGacGCcgACGCCGCuGUugcuCAGGCCg -3'
miRNA:   3'- aUUCGC--CG--UGCGGCG-CAuu--GUCUGGg -5'
29283 5' -56 NC_006150.1 + 149825 0.66 0.947291
Target:  5'- cGAGCcuGGCugGCCGCG-AACc-ACCg -3'
miRNA:   3'- aUUCG--CCGugCGGCGCaUUGucUGGg -5'
29283 5' -56 NC_006150.1 + 89649 0.66 0.947291
Target:  5'- cUAGGuuGCagACGCCGUGUGugacuguggGCGGGCCa -3'
miRNA:   3'- -AUUCgcCG--UGCGGCGCAU---------UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 107267 0.66 0.947291
Target:  5'- --uGCGGCagauuGCGCCGCcGgcGCuucucGGGCCUg -3'
miRNA:   3'- auuCGCCG-----UGCGGCG-CauUG-----UCUGGG- -5'
29283 5' -56 NC_006150.1 + 2141 0.66 0.947291
Target:  5'- --cGCGGUAaccguaGCCGCGaccguACAGAacauCCCa -3'
miRNA:   3'- auuCGCCGUg-----CGGCGCau---UGUCU----GGG- -5'
29283 5' -56 NC_006150.1 + 78161 0.66 0.947291
Target:  5'- --uGCGGCAaaaGCgCGCGUAcgAGaaGCCCu -3'
miRNA:   3'- auuCGCCGUg--CG-GCGCAUugUC--UGGG- -5'
29283 5' -56 NC_006150.1 + 73934 0.66 0.942951
Target:  5'- --cGCGGC-CGCCGCuugcgaGUcaacgaccgcagAGCGGACCg -3'
miRNA:   3'- auuCGCCGuGCGGCG------CA------------UUGUCUGGg -5'
29283 5' -56 NC_006150.1 + 41208 0.66 0.942951
Target:  5'- ---cCGGCAUGUgCGUGUGGCAGGCa- -3'
miRNA:   3'- auucGCCGUGCG-GCGCAUUGUCUGgg -5'
29283 5' -56 NC_006150.1 + 124850 0.66 0.942951
Target:  5'- --uGCGGUgAUGCCGCGga--GGuCCCg -3'
miRNA:   3'- auuCGCCG-UGCGGCGCauugUCuGGG- -5'
29283 5' -56 NC_006150.1 + 40858 0.66 0.942951
Target:  5'- --uGUaGCGCGUCaGCGUAGCAuGACCg -3'
miRNA:   3'- auuCGcCGUGCGG-CGCAUUGU-CUGGg -5'
29283 5' -56 NC_006150.1 + 149968 0.66 0.941605
Target:  5'- aGGGCGGCGCGaCCuGCccgGGCAGGgugccgaacgccacCCCg -3'
miRNA:   3'- aUUCGCCGUGC-GG-CGca-UUGUCU--------------GGG- -5'
29283 5' -56 NC_006150.1 + 63222 0.66 0.938385
Target:  5'- -cGGCGGCAaaaagaagGCCGCugaGUucaaAGACCCa -3'
miRNA:   3'- auUCGCCGUg-------CGGCG---CAuug-UCUGGG- -5'
29283 5' -56 NC_006150.1 + 71063 0.66 0.933591
Target:  5'- -cAGCGGgCAagaggaggaGCCGCGUAuCAGugCg -3'
miRNA:   3'- auUCGCC-GUg--------CGGCGCAUuGUCugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.