miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29319 5' -51.2 NC_006150.1 + 112323 0.66 0.998546
Target:  5'- aCCACGgcGUcGGcGAccguGGUGCg--GCGCu -3'
miRNA:   3'- -GGUGCuuCAuUC-CU----CCGCGaaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 35450 0.66 0.998546
Target:  5'- aCACGAGGU----GGGCGg-UUGUGCa -3'
miRNA:   3'- gGUGCUUCAuuccUCCGCgaAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 152507 0.66 0.998546
Target:  5'- gCCACGAAa-AAGGAucugauuaaugcGGCgacGCUcUGCGCg -3'
miRNA:   3'- -GGUGCUUcaUUCCU------------CCG---CGAaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 137821 0.66 0.998259
Target:  5'- gCGCuGAGUGGaGAGGCGCggcagGCGg -3'
miRNA:   3'- gGUGcUUCAUUcCUCCGCGaaa--CGCg -5'
29319 5' -51.2 NC_006150.1 + 219781 0.66 0.998259
Target:  5'- gCCGCG-GGUggaacguccGAGGcGGGCGCguugugGCGUg -3'
miRNA:   3'- -GGUGCuUCA---------UUCC-UCCGCGaaa---CGCG- -5'
29319 5' -51.2 NC_006150.1 + 220909 0.66 0.998259
Target:  5'- -gGCGGugagAGUGAGGAucGGgGCUggUGCGg -3'
miRNA:   3'- ggUGCU----UCAUUCCU--CCgCGAa-ACGCg -5'
29319 5' -51.2 NC_006150.1 + 53395 0.66 0.998259
Target:  5'- aUACGGAGgaGGGGGGCuaUcaggggGUGCa -3'
miRNA:   3'- gGUGCUUCauUCCUCCGcgAaa----CGCG- -5'
29319 5' -51.2 NC_006150.1 + 70091 0.66 0.998259
Target:  5'- gCACGGAcUGGcGGuGGCGC--UGCGUg -3'
miRNA:   3'- gGUGCUUcAUU-CCuCCGCGaaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 1252 0.66 0.997854
Target:  5'- -gAUGggGUgGAGGAGGUGCgcugagacggGCGa -3'
miRNA:   3'- ggUGCuuCA-UUCCUCCGCGaaa-------CGCg -5'
29319 5' -51.2 NC_006150.1 + 51880 0.66 0.997703
Target:  5'- cCCGCaGAcGGUAucgccggucugguccGGGAGGCauuUUUUGCGCu -3'
miRNA:   3'- -GGUG-CU-UCAU---------------UCCUCCGc--GAAACGCG- -5'
29319 5' -51.2 NC_006150.1 + 85057 0.66 0.997543
Target:  5'- gUACGGuuGUGaAGGAcGaGCGCUaUGCGCc -3'
miRNA:   3'- gGUGCUu-CAU-UCCU-C-CGCGAaACGCG- -5'
29319 5' -51.2 NC_006150.1 + 114881 0.66 0.997101
Target:  5'- cCCACGGAGacc--GGGUGCUc-GCGCa -3'
miRNA:   3'- -GGUGCUUCauuccUCCGCGAaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 202208 0.66 0.996595
Target:  5'- aCugGGAaUAuuGGGGGUGCagUUGCGUg -3'
miRNA:   3'- gGugCUUcAUu-CCUCCGCGa-AACGCG- -5'
29319 5' -51.2 NC_006150.1 + 108971 0.66 0.996595
Target:  5'- uCUGCGAgccgGGUGA-GAGGCGCcgguugGCGUa -3'
miRNA:   3'- -GGUGCU----UCAUUcCUCCGCGaaa---CGCG- -5'
29319 5' -51.2 NC_006150.1 + 180494 0.66 0.996595
Target:  5'- -gGCGGAGgacGAGGAGGaCGCgg-GgGUa -3'
miRNA:   3'- ggUGCUUCa--UUCCUCC-GCGaaaCgCG- -5'
29319 5' -51.2 NC_006150.1 + 117621 0.66 0.996595
Target:  5'- gCACGuAGUucuugaaAGGCGCUggGCGCc -3'
miRNA:   3'- gGUGCuUCAuucc---UCCGCGAaaCGCG- -5'
29319 5' -51.2 NC_006150.1 + 63848 0.67 0.996018
Target:  5'- aCAUGuccAGUAAguGGAGGuCGUUUUGCaGCc -3'
miRNA:   3'- gGUGCu--UCAUU--CCUCC-GCGAAACG-CG- -5'
29319 5' -51.2 NC_006150.1 + 206901 0.67 0.995894
Target:  5'- gCCAcCGAGGU--GGAGGCcGCUcacaacuuuugGCGCc -3'
miRNA:   3'- -GGU-GCUUCAuuCCUCCG-CGAaa---------CGCG- -5'
29319 5' -51.2 NC_006150.1 + 106280 0.67 0.995364
Target:  5'- gCCGCGggGggagagGAGGAGGaCGacgUUGUa- -3'
miRNA:   3'- -GGUGCuuCa-----UUCCUCC-GCga-AACGcg -5'
29319 5' -51.2 NC_006150.1 + 122738 0.67 0.995364
Target:  5'- -gACGAGGUGGGcGAGGacuGCUgggaaugcUGUGCg -3'
miRNA:   3'- ggUGCUUCAUUC-CUCCg--CGAa-------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.