miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 182255 0.66 0.967451
Target:  5'- aAGACAAccGCGugacacgGCGaC-CGGCGGCGa -3'
miRNA:   3'- gUCUGUU--CGCua-----UGC-GuGCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 92695 0.66 0.967451
Target:  5'- -cGAuCAAGCGAUccAgGUACgaGGCGGCGu -3'
miRNA:   3'- guCU-GUUCGCUA--UgCGUG--CCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 68530 0.66 0.967451
Target:  5'- gAGACA--CGucuCGCuCGGCGGUGGu -3'
miRNA:   3'- gUCUGUucGCuauGCGuGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 117312 0.66 0.964348
Target:  5'- uCGGACGuGCcc--CGCAUGGCGGCcauGGa -3'
miRNA:   3'- -GUCUGUuCGcuauGCGUGCCGCCG---CC- -5'
29320 3' -55.9 NC_006150.1 + 142124 0.66 0.964348
Target:  5'- -cGGguAGCGGUAaGCgGgGGCGGUGGg -3'
miRNA:   3'- guCUguUCGCUAUgCG-UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 188388 0.66 0.964348
Target:  5'- aAGGCAGGUGAaaagaaGCGCucgaGGCaGGUGGu -3'
miRNA:   3'- gUCUGUUCGCUa-----UGCGug--CCG-CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 123774 0.66 0.961044
Target:  5'- --aACGAGC--UGCGCAUaGCGGUGGa -3'
miRNA:   3'- gucUGUUCGcuAUGCGUGcCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 118377 0.66 0.961044
Target:  5'- cCAGGauaGAGUGGUGgGCgAUGGCGGUa- -3'
miRNA:   3'- -GUCUg--UUCGCUAUgCG-UGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 108854 0.66 0.961044
Target:  5'- uGGuGCGGGCG-UugGCucuCGGCGGCc- -3'
miRNA:   3'- gUC-UGUUCGCuAugCGu--GCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 85899 0.66 0.961044
Target:  5'- -uGGC-GGCGcUGUGUACGGCGGCcGGu -3'
miRNA:   3'- guCUGuUCGCuAUGCGUGCCGCCG-CC- -5'
29320 3' -55.9 NC_006150.1 + 112425 0.66 0.957534
Target:  5'- aUAGACA-GCGGUu----CGGCGGUGGu -3'
miRNA:   3'- -GUCUGUuCGCUAugcguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 665 0.66 0.957534
Target:  5'- cCGGaACGGGcCGAcagGgGgACGGCGGUGGu -3'
miRNA:   3'- -GUC-UGUUC-GCUa--UgCgUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 191650 0.66 0.957534
Target:  5'- aCAGcaGCGGGCcAUACGCugaGGCGGUaGGu -3'
miRNA:   3'- -GUC--UGUUCGcUAUGCGug-CCGCCG-CC- -5'
29320 3' -55.9 NC_006150.1 + 103264 0.66 0.957534
Target:  5'- uGGACAGGcCGGUG---ACGGCaGCGGg -3'
miRNA:   3'- gUCUGUUC-GCUAUgcgUGCCGcCGCC- -5'
29320 3' -55.9 NC_006150.1 + 107727 0.66 0.949879
Target:  5'- aGGGCuugaaGGGUGGUuuugaGguCGGCGGCGGu -3'
miRNA:   3'- gUCUG-----UUCGCUAug---CguGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 76274 0.67 0.945727
Target:  5'- gAGGCGGGgGccauCGCGCGGuUGGCGa -3'
miRNA:   3'- gUCUGUUCgCuau-GCGUGCC-GCCGCc -5'
29320 3' -55.9 NC_006150.1 + 124076 0.67 0.945727
Target:  5'- gAGGCGGGUGAggaaGCA-GGUGGCGu -3'
miRNA:   3'- gUCUGUUCGCUaug-CGUgCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 181624 0.67 0.945727
Target:  5'- -cGGCAagguAGCGGUGCGC-UGGCGGa-- -3'
miRNA:   3'- guCUGU----UCGCUAUGCGuGCCGCCgcc -5'
29320 3' -55.9 NC_006150.1 + 86417 0.67 0.943131
Target:  5'- gGGGCGGcGCGccagGCGCACGGUgcacauuuccgugcuGGUGGu -3'
miRNA:   3'- gUCUGUU-CGCua--UGCGUGCCG---------------CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 107532 0.67 0.941356
Target:  5'- uCAGuugaGCAGGCccgaGAaGCGC-CGGCGGCGc -3'
miRNA:   3'- -GUC----UGUUCG----CUaUGCGuGCCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.