miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29348 3' -45.7 NC_006150.1 + 86184 0.66 0.999999
Target:  5'- cGCUGugCGACCGUucGACgccaguggUGAUUGCGCc -3'
miRNA:   3'- -CGAUugGUUGGUAu-UUG--------ACUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 213845 0.66 0.999999
Target:  5'- aCUAACCAAagcacucaaaacCCAUGAAC-GACUGCGu -3'
miRNA:   3'- cGAUUGGUU------------GGUAUUUGaCUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 112767 0.66 0.999999
Target:  5'- uUUGGCgAACCGccGACUGAgCUGCGCa -3'
miRNA:   3'- cGAUUGgUUGGUauUUGACU-GGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 99577 0.66 0.999999
Target:  5'- cGCU-GCCAGCaCAUGGACUguaaaGAUCGCu- -3'
miRNA:   3'- -CGAuUGGUUG-GUAUUUGA-----CUGGUGug -5'
29348 3' -45.7 NC_006150.1 + 88221 0.66 0.999999
Target:  5'- gGCgUAGCCAugcgcguucuCCAggGAGC-GGCCGCGCa -3'
miRNA:   3'- -CG-AUUGGUu---------GGUa-UUUGaCUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 156129 0.66 0.999999
Target:  5'- gGUUGGCCAAgucuUCAUccuugguuuccucGAACUGGCC-CACu -3'
miRNA:   3'- -CGAUUGGUU----GGUA-------------UUUGACUGGuGUG- -5'
29348 3' -45.7 NC_006150.1 + 116434 0.66 0.999999
Target:  5'- --cAACCGGCCGUGuaacgcgagaagGGC-GACCGCAg -3'
miRNA:   3'- cgaUUGGUUGGUAU------------UUGaCUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 55833 0.66 0.999999
Target:  5'- cGCUuuCCucuCCAUAu-CUGuuaACCGCACg -3'
miRNA:   3'- -CGAuuGGuu-GGUAUuuGAC---UGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 1317 0.66 0.999999
Target:  5'- aGCUccagauGCCGACCuc--ACUGACUACuCa -3'
miRNA:   3'- -CGAu-----UGGUUGGuauuUGACUGGUGuG- -5'
29348 3' -45.7 NC_006150.1 + 130483 0.66 0.999999
Target:  5'- uGCUAGCCAcggaAUCuacaAAGCUG-UCACGCa -3'
miRNA:   3'- -CGAUUGGU----UGGua--UUUGACuGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 168759 0.66 0.999998
Target:  5'- cGCgucACCcuuCCGUGcccccGACUGACCcCACg -3'
miRNA:   3'- -CGau-UGGuu-GGUAU-----UUGACUGGuGUG- -5'
29348 3' -45.7 NC_006150.1 + 30545 0.66 0.999998
Target:  5'- --gAGCCGGCgCAUGAAaggacaUGACgACGCa -3'
miRNA:   3'- cgaUUGGUUG-GUAUUUg-----ACUGgUGUG- -5'
29348 3' -45.7 NC_006150.1 + 118159 0.66 0.999998
Target:  5'- uGCcGACCGACCc--GGCUGugGCCAgACu -3'
miRNA:   3'- -CGaUUGGUUGGuauUUGAC--UGGUgUG- -5'
29348 3' -45.7 NC_006150.1 + 220385 0.66 0.999998
Target:  5'- aGCUGGCCaAACCAUuuGCUugcaaacuccgGGCCGuccucCACa -3'
miRNA:   3'- -CGAUUGG-UUGGUAuuUGA-----------CUGGU-----GUG- -5'
29348 3' -45.7 NC_006150.1 + 39012 0.66 0.999998
Target:  5'- aGCgGGCCAGCCc--AAC-GACaCACACg -3'
miRNA:   3'- -CGaUUGGUUGGuauUUGaCUG-GUGUG- -5'
29348 3' -45.7 NC_006150.1 + 132920 0.66 0.999998
Target:  5'- uGCUGAUUGACCcUAccuCUGGCCugAUc -3'
miRNA:   3'- -CGAUUGGUUGGuAUuu-GACUGGugUG- -5'
29348 3' -45.7 NC_006150.1 + 204964 0.66 0.999997
Target:  5'- cGCUccgAACCAauccaacaccACCAUGAcCUcGGCCACGa -3'
miRNA:   3'- -CGA---UUGGU----------UGGUAUUuGA-CUGGUGUg -5'
29348 3' -45.7 NC_006150.1 + 35484 0.66 0.999997
Target:  5'- aGCUucACCGGCUGUAugUUcgucguuuucGACCACACg -3'
miRNA:   3'- -CGAu-UGGUUGGUAUuuGA----------CUGGUGUG- -5'
29348 3' -45.7 NC_006150.1 + 220154 0.66 0.999996
Target:  5'- uUUGGCCAGCUGcAGugUGACCGauaGCu -3'
miRNA:   3'- cGAUUGGUUGGUaUUugACUGGUg--UG- -5'
29348 3' -45.7 NC_006150.1 + 142919 0.67 0.999995
Target:  5'- --cGACCAucacGCCGUAcauCUG-CCGCGCg -3'
miRNA:   3'- cgaUUGGU----UGGUAUuu-GACuGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.