miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2935 5' -59.4 NC_001493.1 + 61139 0.66 0.78748
Target:  5'- aGGUGA--GGCGCCGggugGGCCaACCACc- -3'
miRNA:   3'- -CCGCUggCCGUGGCa---CUGG-UGGUGcu -5'
2935 5' -59.4 NC_001493.1 + 85547 0.66 0.78748
Target:  5'- cGGUGAUUGGaaggGCCGUG-CCGCgCACa- -3'
miRNA:   3'- -CCGCUGGCCg---UGGCACuGGUG-GUGcu -5'
2935 5' -59.4 NC_001493.1 + 4176 0.66 0.78748
Target:  5'- gGGauGCCGGuCACCGUGcucuCCACCuGCa- -3'
miRNA:   3'- -CCgcUGGCC-GUGGCACu---GGUGG-UGcu -5'
2935 5' -59.4 NC_001493.1 + 119730 0.66 0.78748
Target:  5'- gGGauGCCGGuCACCGUGcucuCCACCuGCa- -3'
miRNA:   3'- -CCgcUGGCC-GUGGCACu---GGUGG-UGcu -5'
2935 5' -59.4 NC_001493.1 + 95381 0.66 0.786589
Target:  5'- cGGgGACCGGgcgaGCCGUGGaaucguucaugcuCCGggaccCCGCGAg -3'
miRNA:   3'- -CCgCUGGCCg---UGGCACU-------------GGU-----GGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 40205 0.66 0.785697
Target:  5'- cGCGGaucauccCCGaGCugaagagACuCGUGACCACCugGAa -3'
miRNA:   3'- cCGCU-------GGC-CG-------UG-GCACUGGUGGugCU- -5'
2935 5' -59.4 NC_001493.1 + 63204 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 23300 0.66 0.769426
Target:  5'- aGGUguuGAUCGGCGCCcucgauGCCGCCAgGAu -3'
miRNA:   3'- -CCG---CUGGCCGUGGcac---UGGUGGUgCU- -5'
2935 5' -59.4 NC_001493.1 + 128368 0.66 0.769426
Target:  5'- uGGUGACCGGaC-CCGUccGGCC-CCGUGAc -3'
miRNA:   3'- -CCGCUGGCC-GuGGCA--CUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63678 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63498 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63375 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63294 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63249 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 64146 0.66 0.769426
Target:  5'- -aCGACC-GCACgaguCGUGACCgauaucACCACGAa -3'
miRNA:   3'- ccGCUGGcCGUG----GCACUGG------UGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63159 0.66 0.769426
Target:  5'- gGGCuucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 63114 0.66 0.769426
Target:  5'- gGGCaucGCCGGUGUgGUGGUCACCACGGu -3'
miRNA:   3'- -CCGc--UGGCCGUGgCACUGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 12814 0.66 0.769426
Target:  5'- uGGUGACCGGaC-CCGUccGGCC-CCGUGAc -3'
miRNA:   3'- -CCGCUGGCC-GuGGCA--CUGGuGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 75911 0.66 0.769426
Target:  5'- aGCGAaaaacagcCCGGUgaGCgGUG-CCAUCACGAa -3'
miRNA:   3'- cCGCU--------GGCCG--UGgCACuGGUGGUGCU- -5'
2935 5' -59.4 NC_001493.1 + 28365 0.66 0.769426
Target:  5'- cGCGACCGGgguggccgaucuaCAgCGUGAaaacgcggaacuacaCGCCGCGAu -3'
miRNA:   3'- cCGCUGGCC-------------GUgGCACUg--------------GUGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.