miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 120968 0.66 0.921684
Target:  5'- cCAgGcGGGGAacuggAGCGGgcuCAACGGCGGCa -3'
miRNA:   3'- aGUaC-CUCCUg----UCGCC---GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 119038 0.7 0.734486
Target:  5'- ---gGGcgccaAGGACGGCGGCGccGCGGCcGCc -3'
miRNA:   3'- aguaCC-----UCCUGUCGCCGU--UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 118880 0.7 0.70414
Target:  5'- ---cGGcGGcGCGGCGGCGAC-GCGGCc -3'
miRNA:   3'- aguaCCuCC-UGUCGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 118775 0.66 0.909867
Target:  5'- ---cGGAaccuGGAC-GCGGUGGCGcGCGGCg -3'
miRNA:   3'- aguaCCU----CCUGuCGCCGUUGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 118128 0.68 0.853059
Target:  5'- cUCGUGGcGcGCAGCGccgacgacgccGCGGCGGUGGCg -3'
miRNA:   3'- -AGUACCuCcUGUCGC-----------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 113858 0.69 0.773608
Target:  5'- cUAUGuuuGAGcGACGGCGGCucCuGCGGCg -3'
miRNA:   3'- aGUAC---CUC-CUGUCGCCGuuGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 112852 0.73 0.538566
Target:  5'- cUCGUGGAcGuGCAGCGGCAcuuuuuccugcACGGCuGCu -3'
miRNA:   3'- -AGUACCU-CcUGUCGCCGU-----------UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 112595 0.69 0.79242
Target:  5'- uUCGUGGAGGccGCcGCGGC-GCcGCuGGCg -3'
miRNA:   3'- -AGUACCUCC--UGuCGCCGuUGuCG-UCG- -5'
29370 5' -55 NC_006151.1 + 112048 0.72 0.621116
Target:  5'- ---cGGcGGGCgGGCGGCGGCGGUGGUg -3'
miRNA:   3'- aguaCCuCCUG-UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 111980 0.76 0.411557
Target:  5'- -gGUGGGGGugAGCGGUgcGgcuacgacgucgacGCGGCGGCg -3'
miRNA:   3'- agUACCUCCugUCGCCG--U--------------UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 109907 0.67 0.868627
Target:  5'- --------cGCGGCGGCAGCAGCAGa -3'
miRNA:   3'- aguaccuccUGUCGCCGUUGUCGUCg -5'
29370 5' -55 NC_006151.1 + 109297 0.73 0.57953
Target:  5'- -gAUcGAGcGGCccgccgccucGGCGGCAGCAGCGGCg -3'
miRNA:   3'- agUAcCUC-CUG----------UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 109035 0.75 0.450691
Target:  5'- ------cGGGCccaccGGCGGCAGCAGCAGCa -3'
miRNA:   3'- aguaccuCCUG-----UCGCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 108767 0.67 0.875347
Target:  5'- cCGUGGAgaucaaccucgGGACAucuccccGCGGCccCAGUGGCg -3'
miRNA:   3'- aGUACCU-----------CCUGU-------CGCCGuuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 108662 0.66 0.915899
Target:  5'- ---cGGAGGuccccccucaGCAGCcGgAGCGGCGGCc -3'
miRNA:   3'- aguaCCUCC----------UGUCGcCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 105962 0.65 0.92722
Target:  5'- cUCAUGGA-GACGGCGaccGUGGCgGGCAuGCg -3'
miRNA:   3'- -AGUACCUcCUGUCGC---CGUUG-UCGU-CG- -5'
29370 5' -55 NC_006151.1 + 105498 0.65 0.92722
Target:  5'- gUCGaGGAGGACGugcGCGaGCucGACcgcauGGCGGCg -3'
miRNA:   3'- -AGUaCCUCCUGU---CGC-CG--UUG-----UCGUCG- -5'
29370 5' -55 NC_006151.1 + 105367 0.69 0.801604
Target:  5'- cCAUGGAGGu--GCuGGCGcuGC-GCAGCg -3'
miRNA:   3'- aGUACCUCCuguCG-CCGU--UGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 105274 0.66 0.90359
Target:  5'- ---gGGAGGACuuugGGCGcGCGcGCGGCcGCg -3'
miRNA:   3'- aguaCCUCCUG----UCGC-CGU-UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 105217 0.72 0.600274
Target:  5'- ---aGGcGGACAcGCuGCGGCAGCGGCu -3'
miRNA:   3'- aguaCCuCCUGU-CGcCGUUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.