Results 1 - 20 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29374 | 3' | -57.2 | NC_006151.1 | + | 120753 | 0.66 | 0.892635 |
Target: 5'- gGCCGCguCAUGgccuGGGUG--CGGCGCCCGc -3' miRNA: 3'- -CGGCG--GUGC----UCCACaaGUUGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 18556 | 0.66 | 0.892635 |
Target: 5'- aCgGCCGCGAGGc------CGCCCGGc -3' miRNA: 3'- cGgCGGUGCUCCacaaguuGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 69127 | 0.66 | 0.892635 |
Target: 5'- cGCCuCCGCGggcagggcgcgcGGGUGcUCGACGCCg-- -3' miRNA: 3'- -CGGcGGUGC------------UCCACaAGUUGCGGgcc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 89698 | 0.66 | 0.892635 |
Target: 5'- gGCCGCCGCGuccAGGaacccggCGGCGCCgGc -3' miRNA: 3'- -CGGCGGUGC---UCCacaa---GUUGCGGgCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 104886 | 0.66 | 0.892635 |
Target: 5'- cGCCuGCUgcGCGAGGUGgUgGACGCggCGGc -3' miRNA: 3'- -CGG-CGG--UGCUCCACaAgUUGCGg-GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 105053 | 0.66 | 0.892635 |
Target: 5'- cGgCGCCGuCGAGGa----GGCGCCCGa -3' miRNA: 3'- -CgGCGGU-GCUCCacaagUUGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 3393 | 0.66 | 0.892635 |
Target: 5'- gGCCGCCucgGAGGgccgCGGCGUgUGGg -3' miRNA: 3'- -CGGCGGug-CUCCacaaGUUGCGgGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 40577 | 0.66 | 0.892635 |
Target: 5'- gGCCGCgGCgGAGG-GcUCGGCGgcggaggaucguCCCGGu -3' miRNA: 3'- -CGGCGgUG-CUCCaCaAGUUGC------------GGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 49295 | 0.66 | 0.892635 |
Target: 5'- cCCGCCccaaGCu-GGUGUUCAugcucugggGCGCCCa- -3' miRNA: 3'- cGGCGG----UGcuCCACAAGU---------UGCGGGcc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 78710 | 0.66 | 0.892635 |
Target: 5'- cGUCGCCGCGA------CGGCGCCCGu -3' miRNA: 3'- -CGGCGGUGCUccacaaGUUGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 82021 | 0.66 | 0.892635 |
Target: 5'- cGCCGCCgacagcuggGCGAGGUagUCGuCGCUCu- -3' miRNA: 3'- -CGGCGG---------UGCUCCAcaAGUuGCGGGcc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 91259 | 0.66 | 0.892635 |
Target: 5'- cCCGUCGCGAGG------ACGCCCGc -3' miRNA: 3'- cGGCGGUGCUCCacaaguUGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 138721 | 0.66 | 0.892635 |
Target: 5'- cGCCGCgCGCGGGucGUGUaCGcGCGCCgCGa -3' miRNA: 3'- -CGGCG-GUGCUC--CACAaGU-UGCGG-GCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 64100 | 0.66 | 0.885991 |
Target: 5'- cCCG-CACGAGaagaggUCGugGCCCGGc -3' miRNA: 3'- cGGCgGUGCUCcaca--AGUugCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 130348 | 0.66 | 0.885991 |
Target: 5'- cGCCGCgGCGucGUGgUUGACGgCCGc -3' miRNA: 3'- -CGGCGgUGCucCACaAGUUGCgGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 87487 | 0.66 | 0.885991 |
Target: 5'- aGCCGCCGCGGccgcccccGUUCAGgccgcCGCcCCGGc -3' miRNA: 3'- -CGGCGGUGCUcca-----CAAGUU-----GCG-GGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 61307 | 0.66 | 0.885991 |
Target: 5'- gGCgCGUCGCGcugcAGGUccaGggaGACGCCCGGc -3' miRNA: 3'- -CG-GCGGUGC----UCCA---CaagUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 10422 | 0.66 | 0.885991 |
Target: 5'- -aCGCCGCG-GGUGggcCGAgGCCggCGGg -3' miRNA: 3'- cgGCGGUGCuCCACaa-GUUgCGG--GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 140205 | 0.66 | 0.885991 |
Target: 5'- gGCCaCCGCGGGGgcgGUgcugCAgaaccuGCGCCUGa -3' miRNA: 3'- -CGGcGGUGCUCCa--CAa---GU------UGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 73377 | 0.66 | 0.885991 |
Target: 5'- uCCGUCACGGGGgcgcgCAGCGCggCCGc -3' miRNA: 3'- cGGCGGUGCUCCacaa-GUUGCG--GGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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