miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2939 3' -59.5 NC_001493.1 + 40609 0.66 0.792132
Target:  5'- uGCGGgugGAUggaUACCccCACCGGCGA-GCUu -3'
miRNA:   3'- -CGCCa--CUG---GUGGu-GUGGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 63354 0.66 0.79125
Target:  5'- cGCGGUGucguuuGCUcCCGCgggcaucGCCGGUGugGUg -3'
miRNA:   3'- -CGCCAC------UGGuGGUG-------UGGCCGCugCGg -5'
2939 3' -59.5 NC_001493.1 + 47081 0.66 0.79125
Target:  5'- cCGGUGccaccccGCCGCuCACGCgGGUGAUGgUg -3'
miRNA:   3'- cGCCAC-------UGGUG-GUGUGgCCGCUGCgG- -5'
2939 3' -59.5 NC_001493.1 + 57325 0.66 0.786821
Target:  5'- cGCGGUGAagcCCgaggacuuacccgugAUCACACaGGCGACGa- -3'
miRNA:   3'- -CGCCACU---GG---------------UGGUGUGgCCGCUGCgg -5'
2939 3' -59.5 NC_001493.1 + 58806 0.66 0.783253
Target:  5'- cGCGGgccGACCgACCGguaucgACCGGCGugGa- -3'
miRNA:   3'- -CGCCa--CUGG-UGGUg-----UGGCCGCugCgg -5'
2939 3' -59.5 NC_001493.1 + 44047 0.66 0.783253
Target:  5'- cGUGGUGACgGCCccucAgACCGucGCGGC-CCa -3'
miRNA:   3'- -CGCCACUGgUGG----UgUGGC--CGCUGcGG- -5'
2939 3' -59.5 NC_001493.1 + 95811 0.66 0.783253
Target:  5'- gGgGGUGGCUccuccuguaACCGCuCCGGUGuccACGCa -3'
miRNA:   3'- -CgCCACUGG---------UGGUGuGGCCGC---UGCGg -5'
2939 3' -59.5 NC_001493.1 + 32020 0.66 0.782359
Target:  5'- aCGGUG-CCACCGCgcucugggauaggACCGuGCGAuaUGCg -3'
miRNA:   3'- cGCCACuGGUGGUG-------------UGGC-CGCU--GCGg -5'
2939 3' -59.5 NC_001493.1 + 33890 0.66 0.782359
Target:  5'- aUGGUGGCCACgCACACgGG-GcaucucauguucaGCGUCa -3'
miRNA:   3'- cGCCACUGGUG-GUGUGgCCgC-------------UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 87608 0.66 0.774248
Target:  5'- cCGGaagaGACCcguCCGCGCCGGUagUGCCc -3'
miRNA:   3'- cGCCa---CUGGu--GGUGUGGCCGcuGCGG- -5'
2939 3' -59.5 NC_001493.1 + 62996 0.66 0.774248
Target:  5'- aGCGaccggcaccGUGACCGUCGCGaCGGCGAaGCCc -3'
miRNA:   3'- -CGC---------CACUGGUGGUGUgGCCGCUgCGG- -5'
2939 3' -59.5 NC_001493.1 + 29900 0.66 0.774248
Target:  5'- uCGG-GACCACCGugauggaccucuCGaaGGCGAacCGCCa -3'
miRNA:   3'- cGCCaCUGGUGGU------------GUggCCGCU--GCGG- -5'
2939 3' -59.5 NC_001493.1 + 101103 0.66 0.765122
Target:  5'- aGCGGgccccGACCAUaUACACUGGCaagaGCGCa -3'
miRNA:   3'- -CGCCa----CUGGUG-GUGUGGCCGc---UGCGg -5'
2939 3' -59.5 NC_001493.1 + 54874 0.66 0.765122
Target:  5'- aGUGGUGcgaGCCGCcCCGGUcaGCGCCc -3'
miRNA:   3'- -CGCCACuggUGGUGuGGCCGc-UGCGG- -5'
2939 3' -59.5 NC_001493.1 + 99076 0.66 0.765122
Target:  5'- aCGGUGAaaaCCAUCACggACgCGcGCGAUGCg -3'
miRNA:   3'- cGCCACU---GGUGGUG--UG-GC-CGCUGCGg -5'
2939 3' -59.5 NC_001493.1 + 63633 0.66 0.765122
Target:  5'- uGUGGUGGUCACCGCgguGCCGuucGCGGUGUCg -3'
miRNA:   3'- -CGCCACUGGUGGUG---UGGC---CGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 84688 0.66 0.765122
Target:  5'- cUGGgcGCCcUCAgAUCGGCGACGCUg -3'
miRNA:   3'- cGCCacUGGuGGUgUGGCCGCUGCGG- -5'
2939 3' -59.5 NC_001493.1 + 46681 0.66 0.755885
Target:  5'- cGCGGagagcgcaUGGCCACCAuCGCgGGCGugauCuCCu -3'
miRNA:   3'- -CGCC--------ACUGGUGGU-GUGgCCGCu---GcGG- -5'
2939 3' -59.5 NC_001493.1 + 65328 0.66 0.746546
Target:  5'- cGCGGcGugCcguUCGCGCgGGCGAUGgCg -3'
miRNA:   3'- -CGCCaCugGu--GGUGUGgCCGCUGCgG- -5'
2939 3' -59.5 NC_001493.1 + 107419 0.66 0.746546
Target:  5'- uGUGGauuccGGCCACCcccccgGgACCGGUGucaACGCCg -3'
miRNA:   3'- -CGCCa----CUGGUGG------UgUGGCCGC---UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.