Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29396 | 5' | -63.8 | NC_006151.1 | + | 102122 | 0.66 | 0.547682 |
Target: 5'- gGGCCGgagccuguuccccggGCGcGcCGGGCUGCUGGaGCGc- -3' miRNA: 3'- -CCGGC---------------UGC-C-GCCCGGCGACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 3245 | 0.66 | 0.54389 |
Target: 5'- cGGCgCGGCGGCGGagcggggcGCCGC-GGcgcGCGGc -3' miRNA: 3'- -CCG-GCUGCCGCC--------CGGCGaCCa--CGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 52368 | 0.66 | 0.534446 |
Target: 5'- cGCCGGCGcGCccccgGGGcCCGCgGGggcgGCGGGc -3' miRNA: 3'- cCGGCUGC-CG-----CCC-GGCGaCCa---CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 40518 | 0.66 | 0.534446 |
Target: 5'- cGGCCGgagguggcuGCGGCGGcGgCGgaGGUGgCGGc -3' miRNA: 3'- -CCGGC---------UGCCGCC-CgGCgaCCAC-GUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 117032 | 0.66 | 0.534446 |
Target: 5'- gGGCCG-CaGGCGGuaccaGCCgaaGCUGG-GCAGGu -3' miRNA: 3'- -CCGGCuG-CCGCC-----CGG---CGACCaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 31688 | 0.66 | 0.534446 |
Target: 5'- gGGCCGcCGaGCcGGCCGCgccauUGGgcgccggGCGGAa -3' miRNA: 3'- -CCGGCuGC-CGcCCGGCG-----ACCa------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26286 | 0.66 | 0.534446 |
Target: 5'- gGGCgGACGGUGGGgUGgggggGGUGgGGGg -3' miRNA: 3'- -CCGgCUGCCGCCCgGCga---CCACgUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 137908 | 0.66 | 0.525061 |
Target: 5'- aGGUCGACGGCGgcGGCUGCcacGG-GCGc- -3' miRNA: 3'- -CCGGCUGCCGC--CCGGCGa--CCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 40567 | 0.66 | 0.525061 |
Target: 5'- cGG-CGGCGGC-GGCCGCg---GCGGAg -3' miRNA: 3'- -CCgGCUGCCGcCCGGCGaccaCGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 59847 | 0.66 | 0.525061 |
Target: 5'- cGGCCGGucCGGgGGGCgcaGCUGccGCAGc -3' miRNA: 3'- -CCGGCU--GCCgCCCGg--CGACcaCGUCu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 64537 | 0.66 | 0.525061 |
Target: 5'- cGGCCGcgucggggGCGGCGaGGCCG-UGGcGCGc- -3' miRNA: 3'- -CCGGC--------UGCCGC-CCGGCgACCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 90748 | 0.66 | 0.525061 |
Target: 5'- cGCCcucgggGGCGGCGGGCaCGgUGGcggggucgGCGGGc -3' miRNA: 3'- cCGG------CUGCCGCCCG-GCgACCa-------CGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 92180 | 0.66 | 0.525061 |
Target: 5'- cGCCGACGGCgacgGGGCCGCcGacGCGc- -3' miRNA: 3'- cCGGCUGCCG----CCCGGCGaCcaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 26216 | 0.67 | 0.515739 |
Target: 5'- aGGuUCGAgCGGCGGGCCGCc-GUGUuuauuGAg -3' miRNA: 3'- -CC-GGCU-GCCGCCCGGCGacCACGu----CU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 2385 | 0.67 | 0.515739 |
Target: 5'- cGGCCGGCaGGCccucgGGGCCGC-GGaGCu-- -3' miRNA: 3'- -CCGGCUG-CCG-----CCCGGCGaCCaCGucu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 55225 | 0.67 | 0.515739 |
Target: 5'- gGGCaCcACGGCGccGGCgCGCagccGGUGCAGGa -3' miRNA: 3'- -CCG-GcUGCCGC--CCG-GCGa---CCACGUCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 6290 | 0.67 | 0.515739 |
Target: 5'- cGGCCG-CGGCGgcGGCCGCcaGGaGCuGGc -3' miRNA: 3'- -CCGGCuGCCGC--CCGGCGa-CCaCGuCU- -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 125385 | 0.67 | 0.515739 |
Target: 5'- gGGCCGcAUcGC-GGCCGcCUGGUGCGa- -3' miRNA: 3'- -CCGGC-UGcCGcCCGGC-GACCACGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 84627 | 0.67 | 0.512955 |
Target: 5'- cGGCCGccGCGGCGcuggacaacgccauGGCCGCgGGcGCGc- -3' miRNA: 3'- -CCGGC--UGCCGC--------------CCGGCGaCCaCGUcu -5' |
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29396 | 5' | -63.8 | NC_006151.1 | + | 76661 | 0.67 | 0.506484 |
Target: 5'- uGCgGGCGcguguGCGcGGUCGCUGGggaGCAGGg -3' miRNA: 3'- cCGgCUGC-----CGC-CCGGCGACCa--CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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