miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2940 3' -56.1 NC_001493.1 + 16242 0.66 0.911019
Target:  5'- aGGUGUgGCUACcGCGAUGCCUguucgcgcugaauaaGCGGa -3'
miRNA:   3'- cUUAUAgUGGUGcCGCUGCGGG---------------CGCC- -5'
2940 3' -56.1 NC_001493.1 + 131796 0.66 0.911019
Target:  5'- aGGUGUgGCUACcGCGAUGCCUguucgcgcugaauaaGCGGa -3'
miRNA:   3'- cUUAUAgUGGUGcCGCUGCGGG---------------CGCC- -5'
2940 3' -56.1 NC_001493.1 + 44057 0.66 0.908613
Target:  5'- cGAAgcgCACCGUGGUGACGgCCCcucagaccgucGCGGc -3'
miRNA:   3'- -CUUauaGUGGUGCCGCUGC-GGG-----------CGCC- -5'
2940 3' -56.1 NC_001493.1 + 38310 0.66 0.908613
Target:  5'- gGGAUAUgCACC-CGGaCGAaGCCCgaucGCGGu -3'
miRNA:   3'- -CUUAUA-GUGGuGCC-GCUgCGGG----CGCC- -5'
2940 3' -56.1 NC_001493.1 + 43271 0.66 0.902434
Target:  5'- ---cAUUAUCAUGGCG-C-CCCGUGGu -3'
miRNA:   3'- cuuaUAGUGGUGCCGCuGcGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 26603 0.66 0.902434
Target:  5'- -cGUGUCAUCACGGUca-GCCUGUGc -3'
miRNA:   3'- cuUAUAGUGGUGCCGcugCGGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 125350 0.66 0.896024
Target:  5'- ------aACCGCGGgGACGUCgagcucggCGCGGg -3'
miRNA:   3'- cuuauagUGGUGCCgCUGCGG--------GCGCC- -5'
2940 3' -56.1 NC_001493.1 + 9796 0.66 0.896024
Target:  5'- ------aACCGCGGgGACGUCgagcucggCGCGGg -3'
miRNA:   3'- cuuauagUGGUGCCgCUGCGG--------GCGCC- -5'
2940 3' -56.1 NC_001493.1 + 9784 0.66 0.896024
Target:  5'- ---cAUCACCA-GGaCGACGaCCC-CGGa -3'
miRNA:   3'- cuuaUAGUGGUgCC-GCUGC-GGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 125338 0.66 0.896024
Target:  5'- ---cAUCACCA-GGaCGACGaCCC-CGGa -3'
miRNA:   3'- cuuaUAGUGGUgCC-GCUGC-GGGcGCC- -5'
2940 3' -56.1 NC_001493.1 + 23711 0.66 0.896024
Target:  5'- uGAAauUCACUgacuaucucaACGGCGcgcuCGCCUGUGGu -3'
miRNA:   3'- -CUUauAGUGG----------UGCCGCu---GCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 29549 0.66 0.896024
Target:  5'- aGggUGgu-CCGCGacagucCGAgCGCCCGCGGu -3'
miRNA:   3'- -CuuAUaguGGUGCc-----GCU-GCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 89037 0.66 0.889385
Target:  5'- ---aGUCACCACGcGCGuacauggggaggACGCCgCGCu- -3'
miRNA:   3'- cuuaUAGUGGUGC-CGC------------UGCGG-GCGcc -5'
2940 3' -56.1 NC_001493.1 + 85938 0.66 0.882522
Target:  5'- ----uUCACCACGGaGACGCaCCGg-- -3'
miRNA:   3'- cuuauAGUGGUGCCgCUGCG-GGCgcc -5'
2940 3' -56.1 NC_001493.1 + 31194 0.67 0.875437
Target:  5'- uGAAUAcCGCCGCGGCcGCGgUCUGUGa -3'
miRNA:   3'- -CUUAUaGUGGUGCCGcUGC-GGGCGCc -5'
2940 3' -56.1 NC_001493.1 + 30934 0.67 0.875437
Target:  5'- cGGUGcgGCCGCGGUGACGgC-GCGGu -3'
miRNA:   3'- cUUAUagUGGUGCCGCUGCgGgCGCC- -5'
2940 3' -56.1 NC_001493.1 + 25290 0.67 0.85291
Target:  5'- cGAggAUCGCaCGCGGuUGAUGCCCccCGGa -3'
miRNA:   3'- -CUuaUAGUG-GUGCC-GCUGCGGGc-GCC- -5'
2940 3' -56.1 NC_001493.1 + 63494 0.67 0.85291
Target:  5'- -----aCACCGCGaaugucaCGAaGCCCGCGGg -3'
miRNA:   3'- cuuauaGUGGUGCc------GCUgCGGGCGCC- -5'
2940 3' -56.1 NC_001493.1 + 65334 0.67 0.85291
Target:  5'- ----cUCaACCGCGGCG-UGCCguucgCGCGGg -3'
miRNA:   3'- cuuauAG-UGGUGCCGCuGCGG-----GCGCC- -5'
2940 3' -56.1 NC_001493.1 + 107070 0.67 0.85291
Target:  5'- ---gGUCgACCGCcGgGGCGCCCGCu- -3'
miRNA:   3'- cuuaUAG-UGGUGcCgCUGCGGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.