miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29435 3' -63.7 NC_006151.1 + 54070 0.66 0.580491
Target:  5'- gGUGGCgcgcggacccucugCGgCGGcGGCGGCGGCCa-- -3'
miRNA:   3'- gUACCGa-------------GCgGCC-CCGCCGUUGGggg -5'
29435 3' -63.7 NC_006151.1 + 66783 0.66 0.57663
Target:  5'- --cGGgaCGgCGGcGGCGGCGGCggggCCCg -3'
miRNA:   3'- guaCCgaGCgGCC-CCGCCGUUGg---GGG- -5'
29435 3' -63.7 NC_006151.1 + 105754 0.66 0.57663
Target:  5'- gCGUGGCggcgCGCCuGGGCGaccGCGACgUCa -3'
miRNA:   3'- -GUACCGa---GCGGcCCCGC---CGUUGgGGg -5'
29435 3' -63.7 NC_006151.1 + 139640 0.66 0.57663
Target:  5'- --cGGCgccggCGCgGGGGUcgcGGCGggcgcGCCgCCCg -3'
miRNA:   3'- guaCCGa----GCGgCCCCG---CCGU-----UGG-GGG- -5'
29435 3' -63.7 NC_006151.1 + 21359 0.66 0.57663
Target:  5'- --cGGCU--CCGcGGGCuGCGGCCaCCCg -3'
miRNA:   3'- guaCCGAgcGGC-CCCGcCGUUGG-GGG- -5'
29435 3' -63.7 NC_006151.1 + 64537 0.66 0.57663
Target:  5'- --cGGCcgCGUCgGGGGCGGCGAggCCg -3'
miRNA:   3'- guaCCGa-GCGG-CCCCGCCGUUggGGg -5'
29435 3' -63.7 NC_006151.1 + 78178 0.66 0.57663
Target:  5'- --aGGCcgugucCGCCGucGCGGCGgACCCCUu -3'
miRNA:   3'- guaCCGa-----GCGGCccCGCCGU-UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 87268 0.66 0.57663
Target:  5'- gAUGuacGCcccccaGCCGGGGCuGCAcgcgccGCCCCCc -3'
miRNA:   3'- gUAC---CGag----CGGCCCCGcCGU------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 94378 0.66 0.57085
Target:  5'- cCAUGGCgcgCGCUcacaGGUGGCAGCucgugcagaccagguCCCCg -3'
miRNA:   3'- -GUACCGa--GCGGcc--CCGCCGUUG---------------GGGG- -5'
29435 3' -63.7 NC_006151.1 + 25212 0.66 0.567004
Target:  5'- gCGUGGcCUCGgCGGaGCcGCGACCUCUu -3'
miRNA:   3'- -GUACC-GAGCgGCCcCGcCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 11595 0.66 0.567004
Target:  5'- --aGGCUUcCCGGaaccagcGCGGCcaucAACCCCCu -3'
miRNA:   3'- guaCCGAGcGGCCc------CGCCG----UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 44186 0.66 0.567004
Target:  5'- --cGGgUCGCCGuccGGGCGGCGGCg--- -3'
miRNA:   3'- guaCCgAGCGGC---CCCGCCGUUGgggg -5'
29435 3' -63.7 NC_006151.1 + 53974 0.66 0.567004
Target:  5'- --cGGCggCGCCuccgcGGGcgucGCGGCgAGCUCCCg -3'
miRNA:   3'- guaCCGa-GCGG-----CCC----CGCCG-UUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 82293 0.66 0.567004
Target:  5'- --cGGC-CG-CGGGGCaGCGcGCCUCCg -3'
miRNA:   3'- guaCCGaGCgGCCCCGcCGU-UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 103817 0.66 0.567004
Target:  5'- --cGGCg-GCCGuGGCGGCGGCCgUg -3'
miRNA:   3'- guaCCGagCGGCcCCGCCGUUGGgGg -5'
29435 3' -63.7 NC_006151.1 + 119034 0.66 0.567004
Target:  5'- --aGGCgggCGCCaaGGacGGCGGCGccgcggccGCCUCCg -3'
miRNA:   3'- guaCCGa--GCGG--CC--CCGCCGU--------UGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 125225 0.66 0.557419
Target:  5'- --cGGC-CGCCcgucGGGCccGGCGcuCCCCCg -3'
miRNA:   3'- guaCCGaGCGGc---CCCG--CCGUu-GGGGG- -5'
29435 3' -63.7 NC_006151.1 + 72338 0.66 0.557419
Target:  5'- cCAUGGCcgcgagcacgUCGCCGccgcaGGGCaGcGCGACCUCg -3'
miRNA:   3'- -GUACCG----------AGCGGC-----CCCG-C-CGUUGGGGg -5'
29435 3' -63.7 NC_006151.1 + 57433 0.66 0.557419
Target:  5'- ---aGCgucaCGuCCGucGCGGCGGCCCCCg -3'
miRNA:   3'- guacCGa---GC-GGCccCGCCGUUGGGGG- -5'
29435 3' -63.7 NC_006151.1 + 25114 0.66 0.557419
Target:  5'- --cGuGCgagCGCUGGGcGUGGacgcgcgaCAACCCCCu -3'
miRNA:   3'- guaC-CGa--GCGGCCC-CGCC--------GUUGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.