miRNA display CGI


Results 1 - 20 of 667 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 71975 0.66 0.343376
Target:  5'- cGCGGUGCgGCGggggcagcugguagCGCCGGCCGUu-- -3'
miRNA:   3'- uCGCCGCGgCGCg-------------GCGGCCGGCGccc -5'
29455 5' -70 NC_006151.1 + 95212 0.66 0.343376
Target:  5'- cAGCGaGCgGCUGCGCCGCacgcccucgaccgaGGCgccCGuCGGGu -3'
miRNA:   3'- -UCGC-CG-CGGCGCGGCGg-------------CCG---GC-GCCC- -5'
29455 5' -70 NC_006151.1 + 9044 0.66 0.343376
Target:  5'- cGgGGCGCCccgcgugcuccggggGCGCCgGCCGGCCa---- -3'
miRNA:   3'- uCgCCGCGG---------------CGCGG-CGGCCGGcgccc -5'
29455 5' -70 NC_006151.1 + 94664 0.66 0.340587
Target:  5'- cAGCgGGUGCCcgGCGggcagcuccCCGaaGGCCGCGGc -3'
miRNA:   3'- -UCG-CCGCGG--CGC---------GGCggCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 75223 0.66 0.340587
Target:  5'- gGGCGcGCGUCggccacguagGCGCCGaaGGCgcacugcaccucCGCGGGc -3'
miRNA:   3'- -UCGC-CGCGG----------CGCGGCggCCG------------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 70780 0.66 0.340587
Target:  5'- cGCGcGCGCCuccggcaccgGCGUgGCCG-UCGUGGGc -3'
miRNA:   3'- uCGC-CGCGG----------CGCGgCGGCcGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 1698 0.66 0.340587
Target:  5'- cGCGGcCGCCGcCGCCGCUuccaccaccGCCGCc-- -3'
miRNA:   3'- uCGCC-GCGGC-GCGGCGGc--------CGGCGccc -5'
29455 5' -70 NC_006151.1 + 52858 0.66 0.340587
Target:  5'- uGCGGCuGCUGCGUgGCC--UCGCGGu -3'
miRNA:   3'- uCGCCG-CGGCGCGgCGGccGGCGCCc -5'
29455 5' -70 NC_006151.1 + 49256 0.66 0.340587
Target:  5'- cGCGGCucGUgCGCGCCGUCGuCCaGCGGc -3'
miRNA:   3'- uCGCCG--CG-GCGCGGCGGCcGG-CGCCc -5'
29455 5' -70 NC_006151.1 + 113203 0.66 0.340587
Target:  5'- cAGaCGGaCGCCgccgaggaGCGCCGgcaCCGcGCCGUGGa -3'
miRNA:   3'- -UC-GCC-GCGG--------CGCGGC---GGC-CGGCGCCc -5'
29455 5' -70 NC_006151.1 + 117419 0.66 0.340587
Target:  5'- cAGCaGCGugaccaCCGUGCCGuuGGggaagCGCGGGu -3'
miRNA:   3'- -UCGcCGC------GGCGCGGCggCCg----GCGCCC- -5'
29455 5' -70 NC_006151.1 + 32765 0.66 0.340587
Target:  5'- cGCccCGCUcucccaCGCCG-CGGCCGCGGGg -3'
miRNA:   3'- uCGccGCGGc-----GCGGCgGCCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 103302 0.66 0.340587
Target:  5'- cGCGGCucgcGCgGCGCgaCGCCGaGCUGCGc- -3'
miRNA:   3'- uCGCCG----CGgCGCG--GCGGC-CGGCGCcc -5'
29455 5' -70 NC_006151.1 + 82862 0.66 0.340587
Target:  5'- cGCGGUcuccaucugGCCGCGgCGCgGGUgGgaGGGg -3'
miRNA:   3'- uCGCCG---------CGGCGCgGCGgCCGgCg-CCC- -5'
29455 5' -70 NC_006151.1 + 56106 0.66 0.340587
Target:  5'- -cCGcCGCCGCuGCCucGCCGGggaggccuuCCGCGGGu -3'
miRNA:   3'- ucGCcGCGGCG-CGG--CGGCC---------GGCGCCC- -5'
29455 5' -70 NC_006151.1 + 20856 0.66 0.340587
Target:  5'- cGGCGGCGUacuCGCGCgUGUagcaGGCgCGCuuGGGg -3'
miRNA:   3'- -UCGCCGCG---GCGCG-GCGg---CCG-GCG--CCC- -5'
29455 5' -70 NC_006151.1 + 117629 0.66 0.340587
Target:  5'- cGCGaGCGUgcccaCGUGCaCGCCGcGCUGCuccGGGg -3'
miRNA:   3'- uCGC-CGCG-----GCGCG-GCGGC-CGGCG---CCC- -5'
29455 5' -70 NC_006151.1 + 22971 0.66 0.339893
Target:  5'- cGGUGGUGaCCGUggucaugGUCGUgaucuCGGCCGCGcGGg -3'
miRNA:   3'- -UCGCCGC-GGCG-------CGGCG-----GCCGGCGC-CC- -5'
29455 5' -70 NC_006151.1 + 91768 0.66 0.339893
Target:  5'- gGGCGGUG-UGCGCCagaccaaucaccGcCCGGCuuauaugCGCGGGa -3'
miRNA:   3'- -UCGCCGCgGCGCGG------------C-GGCCG-------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 101580 0.66 0.338507
Target:  5'- cGCGG-GCUaCGCCGCCagcgagcuccggugGGCCG-GGGc -3'
miRNA:   3'- uCGCCgCGGcGCGGCGG--------------CCGGCgCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.