Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 43359 | 0.67 | 0.953763 |
Target: 5'- gGGGGGggGGGAgagagaccgucgGGGGCGGUGguGGCc -3' miRNA: 3'- -UCCUCgaCCUUa-----------CCCUGCUACuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 37429 | 0.67 | 0.954576 |
Target: 5'- gAGGGGCUc---UGGGACGAgGAcGACg -3' miRNA: 3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 8562 | 0.67 | 0.958499 |
Target: 5'- gAGaGAGCgugcgUGuGggUGGGugGGugUGAGGGCc -3' miRNA: 3'- -UC-CUCG-----AC-CuuACCCugCU--ACUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 27303 | 0.67 | 0.958499 |
Target: 5'- gGGGGGCgugGGggUcgaggcggGGGACG--GggGGCu -3' miRNA: 3'- -UCCUCGa--CCuuA--------CCCUGCuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 142531 | 0.68 | 0.912974 |
Target: 5'- aGGGGGUUGGGGgaaagggGGGAaCGAggggguugggggGAAGGCg -3' miRNA: 3'- -UCCUCGACCUUa------CCCU-GCUa-----------CUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 45595 | 0.68 | 0.914192 |
Target: 5'- aGGGGGCgggGGGAgccccgacGGGGCGGgcgGAAGGg -3' miRNA: 3'- -UCCUCGa--CCUUa-------CCCUGCUa--CUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 127911 | 0.68 | 0.914192 |
Target: 5'- cGGGGGCcccucgGGGAgcgGGGGCGgcG-AGACg -3' miRNA: 3'- -UCCUCGa-----CCUUa--CCCUGCuaCuUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 4599 | 0.68 | 0.914192 |
Target: 5'- aAGGAGCcgUGGccGUGGGGCGcGUGGAcccGGCg -3' miRNA: 3'- -UCCUCG--ACCu-UACCCUGC-UACUU---CUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 95504 | 0.68 | 0.914192 |
Target: 5'- aAGGGGCUgcccgucaugacGGcgcUGcGGACGAUGAGGAa -3' miRNA: 3'- -UCCUCGA------------CCuu-AC-CCUGCUACUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 128734 | 0.68 | 0.920132 |
Target: 5'- uGGGGGCUGaGAccAUGGGGuCGAgc-GGGCg -3' miRNA: 3'- -UCCUCGAC-CU--UACCCU-GCUacuUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 30031 | 0.68 | 0.931244 |
Target: 5'- gGGGAGgaGGGggGGGAgGAgugagcgGggGAa -3' miRNA: 3'- -UCCUCgaCCUuaCCCUgCUa------CuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 133614 | 0.68 | 0.931244 |
Target: 5'- gAGGGGCgucugGGggUcgcggcggccGGGGCGGUGGuccgggugcgagAGGCg -3' miRNA: 3'- -UCCUCGa----CCuuA----------CCCUGCUACU------------UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 112035 | 0.69 | 0.880733 |
Target: 5'- cGGGAGCUGGGGccgGcGGGCGGgcGgcGGCg -3' miRNA: 3'- -UCCUCGACCUUa--C-CCUGCUa-CuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 15619 | 0.69 | 0.887916 |
Target: 5'- -cGAGgaGGAcgGGGACGAcuuUGAcgGGGCc -3' miRNA: 3'- ucCUCgaCCUuaCCCUGCU---ACU--UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 15497 | 0.69 | 0.894857 |
Target: 5'- gGGGAGgaGGAAgacGaGGACGAggagGggGAa -3' miRNA: 3'- -UCCUCgaCCUUa--C-CCUGCUa---CuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 30413 | 0.69 | 0.894857 |
Target: 5'- gGGGAGa-GGAAggagGGGAgGAcgGAGGGCg -3' miRNA: 3'- -UCCUCgaCCUUa---CCCUgCUa-CUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 45146 | 0.69 | 0.894857 |
Target: 5'- aGGGGGUUGGAu--GGACGGcUGGauGGACg -3' miRNA: 3'- -UCCUCGACCUuacCCUGCU-ACU--UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 130867 | 0.69 | 0.894857 |
Target: 5'- -cGGGCgGGAccgcaGUGGGcggcgGCGGUGGAGGCg -3' miRNA: 3'- ucCUCGaCCU-----UACCC-----UGCUACUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 93427 | 0.69 | 0.901552 |
Target: 5'- gAGaGAGgaGGAggGGGGCGAgcgGggGuCg -3' miRNA: 3'- -UC-CUCgaCCUuaCCCUGCUa--CuuCuG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 33952 | 0.69 | 0.873314 |
Target: 5'- cGGGGGCUcGGGGcGGGACGcgGcgcccgcgcgGGGACa -3' miRNA: 3'- -UCCUCGA-CCUUaCCCUGCuaC----------UUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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