miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 33952 0.69 0.873314
Target:  5'- cGGGGGCUcGGGGcGGGACGcgGcgcccgcgcgGGGACa -3'
miRNA:   3'- -UCCUCGA-CCUUaCCCUGCuaC----------UUCUG- -5'
29479 5' -52.6 NC_006151.1 + 12415 0.69 0.873314
Target:  5'- aGGGGGCUGG-GUGGGGUGAggcGAGuGACc -3'
miRNA:   3'- -UCCUCGACCuUACCCUGCUa--CUU-CUG- -5'
29479 5' -52.6 NC_006151.1 + 71541 0.7 0.865663
Target:  5'- cGGGuuuauuuGCgagGGAGgggGGGGCGAgGggGACg -3'
miRNA:   3'- -UCCu------CGa--CCUUa--CCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 89173 0.7 0.857787
Target:  5'- aGGcGGGCgcgGGggUcgGGGGCGGaGAGGGCg -3'
miRNA:   3'- -UC-CUCGa--CCuuA--CCCUGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 3815 0.7 0.857787
Target:  5'- uGGAGCUGGAcuUGGugcuGGCGGggcugGAGGGCc -3'
miRNA:   3'- uCCUCGACCUu-ACC----CUGCUa----CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 23013 0.7 0.849693
Target:  5'- uGGGGGCgcgGGggUGGuggaGGCGgcGAAGAa -3'
miRNA:   3'- -UCCUCGa--CCuuACC----CUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 11804 0.7 0.849693
Target:  5'- gAGGGGC-GGggUgGGGugGggGgcGGCg -3'
miRNA:   3'- -UCCUCGaCCuuA-CCCugCuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 31408 0.7 0.849693
Target:  5'- cGGGGCgaggGGAagGGGAagGggGggGACg -3'
miRNA:   3'- uCCUCGa---CCUuaCCCUg-CuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 80050 0.7 0.849693
Target:  5'- cGGGAGuCUGGcuGUGGGA-GA-GAGGGCg -3'
miRNA:   3'- -UCCUC-GACCu-UACCCUgCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 32846 0.7 0.832878
Target:  5'- gGGGGGCcGGcg-GGGAUGggGAAGAa -3'
miRNA:   3'- -UCCUCGaCCuuaCCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 70137 0.7 0.832016
Target:  5'- cAGGAGggGGuccGGGACGAUGAcgugcacgagcgcGGGCg -3'
miRNA:   3'- -UCCUCgaCCuuaCCCUGCUACU-------------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 22863 0.71 0.824173
Target:  5'- cAGGAGCaGGGcgGGGcugcCGGUGggGGu -3'
miRNA:   3'- -UCCUCGaCCUuaCCCu---GCUACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 23431 0.71 0.815281
Target:  5'- uGGGGGCgauGggUGGGAgGGUGGccccgGGGCg -3'
miRNA:   3'- -UCCUCGac-CuuACCCUgCUACU-----UCUG- -5'
29479 5' -52.6 NC_006151.1 + 9519 0.71 0.787573
Target:  5'- uGGGGaaGGAAgagGGGACGggGggGAa -3'
miRNA:   3'- uCCUCgaCCUUa--CCCUGCuaCuuCUg -5'
29479 5' -52.6 NC_006151.1 + 27953 0.71 0.787573
Target:  5'- cGGGGUggggagGGAGggGGGACGggGAGGAg -3'
miRNA:   3'- uCCUCGa-----CCUUa-CCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 5175 0.72 0.778025
Target:  5'- cGGAGgaGGAcgaGGACGAgGAGGACg -3'
miRNA:   3'- uCCUCgaCCUuacCCUGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 15542 0.72 0.778025
Target:  5'- gAGGAGgaagaGGAagGGGACGAggacggGGAGACg -3'
miRNA:   3'- -UCCUCga---CCUuaCCCUGCUa-----CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 44469 0.72 0.758519
Target:  5'- gGGGGGUgagggUGGAcgGGGGgGGUGggGGa -3'
miRNA:   3'- -UCCUCG-----ACCUuaCCCUgCUACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 20127 0.72 0.758519
Target:  5'- cGGGGCUGGGggGcGGGCGccgcGggGGCg -3'
miRNA:   3'- uCCUCGACCUuaC-CCUGCua--CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 10232 0.72 0.748581
Target:  5'- cGGAcGC-GGAggGGGGCGA-GggGACa -3'
miRNA:   3'- uCCU-CGaCCUuaCCCUGCUaCuuCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.