Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29482 | 5' | -57.5 | NC_006151.1 | + | 82351 | 0.66 | 0.868277 |
Target: 5'- cGCCGCCGUggUGuacGUGCgCCGgacGCCGGGc -3' miRNA: 3'- -CGGUGGUAg-ACu--CACG-GGU---UGGCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 113085 | 0.66 | 0.860846 |
Target: 5'- cGCgGCCGUCgcc--GCCgCcACCGGGGg -3' miRNA: 3'- -CGgUGGUAGacucaCGG-GuUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 29756 | 0.66 | 0.853214 |
Target: 5'- -aCACUcUCUGuGUGUgCAcacgggACCGGGGa -3' miRNA: 3'- cgGUGGuAGACuCACGgGU------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 1797 | 0.66 | 0.853214 |
Target: 5'- gGCCACCGggCcGGGgagGCaggcGCCGGGGa -3' miRNA: 3'- -CGGUGGUa-GaCUCa--CGggu-UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 36115 | 0.66 | 0.845387 |
Target: 5'- gGCCGCCGUCcucgcgGCCgCGGCCGGa- -3' miRNA: 3'- -CGGUGGUAGacuca-CGG-GUUGGCCcc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 24868 | 0.66 | 0.845387 |
Target: 5'- aCCACCGUgUccgccucGCCCGGCCGGcGGg -3' miRNA: 3'- cGGUGGUAgAcuca---CGGGUUGGCC-CC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 73581 | 0.66 | 0.845387 |
Target: 5'- aCCACCGUCaGGGcGa--AGCCGGGGu -3' miRNA: 3'- cGGUGGUAGaCUCaCgggUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 66186 | 0.66 | 0.845387 |
Target: 5'- gGCCGCCAUaa-AG-GCCCGgacgaACuCGGGGu -3' miRNA: 3'- -CGGUGGUAgacUCaCGGGU-----UG-GCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 37160 | 0.66 | 0.845387 |
Target: 5'- cGCCACCGUCUccgccGGcGCCC-GCCGcGGc -3' miRNA: 3'- -CGGUGGUAGAc----UCaCGGGuUGGC-CCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 11018 | 0.66 | 0.845387 |
Target: 5'- cCCGCCcgCUcgcucgccGGGccGgCCGGCCGGGGg -3' miRNA: 3'- cGGUGGuaGA--------CUCa-CgGGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 120112 | 0.66 | 0.837371 |
Target: 5'- cGCCGCCGcgUGGuggacaUGCUCAACgGGGGc -3' miRNA: 3'- -CGGUGGUagACUc-----ACGGGUUGgCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 91395 | 0.66 | 0.837371 |
Target: 5'- cGCUGCCGUCgacguUGCCCAggaacacgGCCuGGGGc -3' miRNA: 3'- -CGGUGGUAGacuc-ACGGGU--------UGG-CCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 136873 | 0.66 | 0.829174 |
Target: 5'- aCCGCCGUCgagGAGcGCCUcgcgccccacGGCUGGGu -3' miRNA: 3'- cGGUGGUAGa--CUCaCGGG----------UUGGCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 98054 | 0.66 | 0.829174 |
Target: 5'- aCCACCAgccCcGGGcGCUCGGCCuGGGGc -3' miRNA: 3'- cGGUGGUa--GaCUCaCGGGUUGG-CCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 9035 | 0.67 | 0.820802 |
Target: 5'- cCCGCCcgCcgGGGcGCCCcgcgugcuCCGGGGg -3' miRNA: 3'- cGGUGGuaGa-CUCaCGGGuu------GGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 26230 | 0.67 | 0.820802 |
Target: 5'- gGCCGCCGUguuuaUUGAGgGCaCAACagaGGGGa -3' miRNA: 3'- -CGGUGGUA-----GACUCaCGgGUUGg--CCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 40041 | 0.67 | 0.818258 |
Target: 5'- cGCCGCCGggggCgccgugGAGacccaccgGCCCGcgggggccucgggcGCCGGGGc -3' miRNA: 3'- -CGGUGGUa---Ga-----CUCa-------CGGGU--------------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 646 | 0.67 | 0.812264 |
Target: 5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3' miRNA: 3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 133610 | 0.67 | 0.812264 |
Target: 5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3' miRNA: 3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 99669 | 0.67 | 0.812264 |
Target: 5'- cGCagaGCCG-CUGGG-GCCUGcgcgccgacggcGCCGGGGa -3' miRNA: 3'- -CGg--UGGUaGACUCaCGGGU------------UGGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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