miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29520 3' -50.1 NC_006151.1 + 66925 0.74 0.82958
Target:  5'- aCGAugGAGgcGGGGGCGaGGGC--AAAGGc -3'
miRNA:   3'- -GCU--UUUuuCCCCCGC-CCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 66841 0.72 0.905946
Target:  5'- gGGGAAGAGGagaaggacgagaGGGcCGGGGCggcgcGAAGGg -3'
miRNA:   3'- gCUUUUUUCC------------CCC-GCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 63496 0.73 0.878192
Target:  5'- cCGAAGAAgguggccagguGGGGGcgcGCGGGGCggucGGGGa -3'
miRNA:   3'- -GCUUUUU-----------UCCCC---CGCCCCGaau-UUCC- -5'
29520 3' -50.1 NC_006151.1 + 49740 0.66 0.996433
Target:  5'- gCGAAgacgGAGAGGGGGacguGGaagacGGCgagGAGGGg -3'
miRNA:   3'- -GCUU----UUUUCCCCCg---CC-----CCGaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 49632 0.69 0.964785
Target:  5'- gCGAGu---GGGGGUGGGccgUGGAGGa -3'
miRNA:   3'- -GCUUuuuuCCCCCGCCCcgaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 49529 0.77 0.650279
Target:  5'- aCGAGGAGGGGGGaGgGGGGUggGAuGGa -3'
miRNA:   3'- -GCUUUUUUCCCC-CgCCCCGaaUUuCC- -5'
29520 3' -50.1 NC_006151.1 + 46042 0.68 0.98134
Target:  5'- gGGGAAGAGGaugagccgguaGGGgGGGGCUUcgcGGu -3'
miRNA:   3'- gCUUUUUUCC-----------CCCgCCCCGAAuuuCC- -5'
29520 3' -50.1 NC_006151.1 + 45592 0.75 0.754274
Target:  5'- cCGAGGGGgcGGGGGGagccccgaCGGGGCgggcgGAAGGg -3'
miRNA:   3'- -GCUUUUU--UCCCCC--------GCCCCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 45318 0.67 0.991235
Target:  5'- cCGGGAGGcuGGGaGGGUGGcGGU--GGAGGa -3'
miRNA:   3'- -GCUUUUU--UCC-CCCGCC-CCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 45027 0.66 0.994298
Target:  5'- aUGAGAAGcgaauGGGGGaagcguggGGGGUgUGGGGGg -3'
miRNA:   3'- -GCUUUUUu----CCCCCg-------CCCCGaAUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44835 0.73 0.854868
Target:  5'- uCGGGAccGGGGcGaGCGGGGUcgUGGAGGg -3'
miRNA:   3'- -GCUUUuuUCCC-C-CGCCCCGa-AUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44801 0.73 0.878192
Target:  5'- gGguGAAAGGGGGUgcuaugGGGGUgcGAGGGc -3'
miRNA:   3'- gCuuUUUUCCCCCG------CCCCGaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44481 0.77 0.650279
Target:  5'- uGGAcgGGGGGGGUGGGGgaUGGuguGGGg -3'
miRNA:   3'- gCUUuuUUCCCCCGCCCCgaAUU---UCC- -5'
29520 3' -50.1 NC_006151.1 + 44337 0.66 0.99581
Target:  5'- gGAGAGGAGGgccgcggacGGGUGGgacGGCgggggAGAGGg -3'
miRNA:   3'- gCUUUUUUCC---------CCCGCC---CCGaa---UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 44290 0.73 0.86287
Target:  5'- gCGGAAcAGGGGGGaaCGGGGaugcGAAGGg -3'
miRNA:   3'- -GCUUUuUUCCCCC--GCCCCgaa-UUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43927 0.68 0.98134
Target:  5'- aGAGAGAGGaGGGagaGGGGCc--GGGGg -3'
miRNA:   3'- gCUUUUUUCcCCCg--CCCCGaauUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43900 0.71 0.918313
Target:  5'- gCGcgGAGAGGGGuaGGGGag-GGGGGa -3'
miRNA:   3'- -GCuuUUUUCCCCcgCCCCgaaUUUCC- -5'
29520 3' -50.1 NC_006151.1 + 43727 0.72 0.912258
Target:  5'- uCGggGAcgguGGGGGCGGGGg--AGAcGGg -3'
miRNA:   3'- -GCuuUUuu--CCCCCGCCCCgaaUUU-CC- -5'
29520 3' -50.1 NC_006151.1 + 43349 0.73 0.878192
Target:  5'- aGAAGcggGAGGGGGGgGGGGag-AGAGa -3'
miRNA:   3'- gCUUU---UUUCCCCCgCCCCgaaUUUCc -5'
29520 3' -50.1 NC_006151.1 + 43224 0.66 0.996977
Target:  5'- -----cGGGGGGGaaaaGGGGCgacaccGGGGa -3'
miRNA:   3'- gcuuuuUUCCCCCg---CCCCGaau---UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.