miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 30874 0.66 0.921358
Target:  5'- cGCGGGCuucguggagGCCgccgcggcgCCGCuggcgcugGACGAGCCCu -3'
miRNA:   3'- -CGUCUGua-------CGGa--------GGUG--------UUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 39153 0.66 0.921358
Target:  5'- gGCuGACGUGgCUCgACGacuacgccgucGCGGcGCCCGu -3'
miRNA:   3'- -CGuCUGUACgGAGgUGU-----------UGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 106004 0.66 0.921358
Target:  5'- cCAGGCcgcgGCCcgcuaccgcgCCGCGGcCGGGCCCGu -3'
miRNA:   3'- cGUCUGua--CGGa---------GGUGUU-GCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 18257 0.66 0.921358
Target:  5'- cGUGGGCcccgcgGCCcCCGCGGCcgcccgucGGGCCCGg -3'
miRNA:   3'- -CGUCUGua----CGGaGGUGUUG--------CUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 46310 0.66 0.921358
Target:  5'- gGCAGGuccaCCgagCCGCAGCGcucGGCCCGg -3'
miRNA:   3'- -CGUCUguacGGa--GGUGUUGC---UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 75068 0.66 0.921358
Target:  5'- cGCGGcCA--CCUCCAUGGCGcgcGCCCGc -3'
miRNA:   3'- -CGUCuGUacGGAGGUGUUGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 78500 0.66 0.921358
Target:  5'- uGCGGGCGcagGCCgagcgCCACGuccagcagcACGuGGCCCa -3'
miRNA:   3'- -CGUCUGUa--CGGa----GGUGU---------UGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 51986 0.66 0.917953
Target:  5'- cGUAGACcUGCUcgCCGCGcACGcuggcgugcaccagcAGCCCGg -3'
miRNA:   3'- -CGUCUGuACGGa-GGUGU-UGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 87570 0.66 0.917953
Target:  5'- gGCGGACGUgcGCCgggcgaccgagcggcUCCGCgAugGAGgCCGu -3'
miRNA:   3'- -CGUCUGUA--CGG---------------AGGUG-UugCUCgGGC- -5'
29523 3' -55.5 NC_006151.1 + 138772 0.66 0.915635
Target:  5'- -aGGACAUgGCCUCgC-CGGCG-GCCCc -3'
miRNA:   3'- cgUCUGUA-CGGAG-GuGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 20678 0.66 0.915635
Target:  5'- cGUGGGCGgcugcgcgGCCUCgCcCGACGAGCgCCu -3'
miRNA:   3'- -CGUCUGUa-------CGGAG-GuGUUGCUCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 126006 0.66 0.915635
Target:  5'- cGCAGcaccACGUGUUgCCGCGGCGuGUCCu -3'
miRNA:   3'- -CGUC----UGUACGGaGGUGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 39199 0.66 0.915635
Target:  5'- -gAGAac-GCCggcgCgGCGGCGGGCCCGc -3'
miRNA:   3'- cgUCUguaCGGa---GgUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 38550 0.66 0.915635
Target:  5'- gGCGGcgGCGcGCgaCCGCGACGgGGCCCu -3'
miRNA:   3'- -CGUC--UGUaCGgaGGUGUUGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 27523 0.66 0.915635
Target:  5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3'
miRNA:   3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 18397 0.66 0.915635
Target:  5'- aGCAcGcACGUGCUggCCgGCGACaGGCCCGa -3'
miRNA:   3'- -CGU-C-UGUACGGa-GG-UGUUGcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 14013 0.66 0.915635
Target:  5'- gGCGGggcGCAcgGCCgugggCGgGACGAGCCCGu -3'
miRNA:   3'- -CGUC---UGUa-CGGag---GUgUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 7187 0.66 0.915635
Target:  5'- cGCGG-CcgGCCUaCgACcuGCGGGCCCu -3'
miRNA:   3'- -CGUCuGuaCGGA-GgUGu-UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 5346 0.66 0.915635
Target:  5'- gGCGGACAUGCUg-CGCGGCcuGGCCg- -3'
miRNA:   3'- -CGUCUGUACGGagGUGUUGc-UCGGgc -5'
29523 3' -55.5 NC_006151.1 + 118986 0.66 0.915635
Target:  5'- cGgGGGCGUugGUCUCgAugguccCGGCGAGCCCGu -3'
miRNA:   3'- -CgUCUGUA--CGGAGgU------GUUGCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.