Results 1 - 20 of 450 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29553 | 3' | -63.2 | NC_006151.1 | + | 97214 | 0.66 | 0.615095 |
Target: 5'- cACguagGCgGCGuacaugcacgaguuCCGGgugGCGCGGCCGCGc -3' miRNA: 3'- -UGa---UGgCGCu-------------GGCCg--CGUGCCGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 109117 | 0.66 | 0.611207 |
Target: 5'- --aGCCGcCGGCCcGCGCccgcCGGCCGgGc -3' miRNA: 3'- ugaUGGC-GCUGGcCGCGu---GCCGGCgC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 19445 | 0.66 | 0.611207 |
Target: 5'- -----gGCGGCUcGCGCugGaGCCGCGg -3' miRNA: 3'- ugauggCGCUGGcCGCGugC-CGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 52750 | 0.66 | 0.611207 |
Target: 5'- uGCUGCgCGCGcGCCucgcaGCGCAgcGCCGCGg -3' miRNA: 3'- -UGAUG-GCGC-UGGc----CGCGUgcCGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 56288 | 0.66 | 0.611207 |
Target: 5'- cCUGCCccGCGGCggaGGCGgACG-CCGCGc -3' miRNA: 3'- uGAUGG--CGCUGg--CCGCgUGCcGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 57963 | 0.66 | 0.611207 |
Target: 5'- aGCccguCCGUGAgCCGGUGgGCGGCgaGCGn -3' miRNA: 3'- -UGau--GGCGCU-GGCCGCgUGCCGg-CGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 61340 | 0.66 | 0.611207 |
Target: 5'- --gGCCaGCGGCUGcGCacCACGGCCGgGa -3' miRNA: 3'- ugaUGG-CGCUGGC-CGc-GUGCCGGCgC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 64506 | 0.66 | 0.611207 |
Target: 5'- -----gGCGGCgGGCGCGCG-CCGCc -3' miRNA: 3'- ugauggCGCUGgCCGCGUGCcGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 93674 | 0.66 | 0.611207 |
Target: 5'- gGCUGUCGCGcggGGCGCGCGcCCGCa -3' miRNA: 3'- -UGAUGGCGCuggCCGCGUGCcGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 127566 | 0.66 | 0.611207 |
Target: 5'- --gGCCGCcGCCGGCGCcuCGuucGCCGUc -3' miRNA: 3'- ugaUGGCGcUGGCCGCGu-GC---CGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 19910 | 0.66 | 0.611207 |
Target: 5'- --aGCUGCG--CGGCGCGCagcagaaagGGCCGCa -3' miRNA: 3'- ugaUGGCGCugGCCGCGUG---------CCGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 58927 | 0.66 | 0.611207 |
Target: 5'- --cGCCGCGGCCGucauaGCGCcgcaaaguccACGGCCcccucggugcGCGg -3' miRNA: 3'- ugaUGGCGCUGGC-----CGCG----------UGCCGG----------CGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 67850 | 0.66 | 0.611207 |
Target: 5'- aGCaGCCcgGCGAgCCGGCGCcgaggUGGCgCGCGc -3' miRNA: 3'- -UGaUGG--CGCU-GGCCGCGu----GCCG-GCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 69438 | 0.66 | 0.611207 |
Target: 5'- --cGCCGCcGCCGuucGCGUccucGCGcGCCGCGg -3' miRNA: 3'- ugaUGGCGcUGGC---CGCG----UGC-CGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 96579 | 0.66 | 0.611207 |
Target: 5'- cGCcGCCucGCGGCgcgaGGCGC-CGGgCGCGg -3' miRNA: 3'- -UGaUGG--CGCUGg---CCGCGuGCCgGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 98398 | 0.66 | 0.611207 |
Target: 5'- cCUGCCGCgccuacgucgaGACgGGCaccuGCgagGCGGCCGUGc -3' miRNA: 3'- uGAUGGCG-----------CUGgCCG----CG---UGCCGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 100557 | 0.66 | 0.611207 |
Target: 5'- --cGCCGCccucacGGCCGGcCGCcuGCaGGCCGCc -3' miRNA: 3'- ugaUGGCG------CUGGCC-GCG--UG-CCGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 86549 | 0.66 | 0.610236 |
Target: 5'- gGCcGCCGUGGcgccguuCCGGCagcucucgGCGCGGgCGCGc -3' miRNA: 3'- -UGaUGGCGCU-------GGCCG--------CGUGCCgGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 85907 | 0.66 | 0.608293 |
Target: 5'- --cGCCGUGGCCgugcaguacgaggaGGgGCugGGCCuGCu -3' miRNA: 3'- ugaUGGCGCUGG--------------CCgCGugCCGG-CGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 127451 | 0.66 | 0.60538 |
Target: 5'- --aGCCgGCGGCgcacgaagcgcugggCGGCGCggaACGaGCCGCGg -3' miRNA: 3'- ugaUGG-CGCUG---------------GCCGCG---UGC-CGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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