Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 22908 | 0.66 | 0.89372 |
Target: 5'- gGGCGAGAcgaaggucgGCUcCGGCGGCAgucggugaugcCGCugGg -3' miRNA: 3'- -CCGCUCU---------UGGaGCUGCCGU-----------GCGugUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 81678 | 0.66 | 0.89372 |
Target: 5'- cGGCGGuacGCCUCGGCGacggucGCcCGCGCGa -3' miRNA: 3'- -CCGCUcu-UGGAGCUGC------CGuGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 86150 | 0.66 | 0.89372 |
Target: 5'- cGGCGGGGAgCUCG-CGcugACGCGCGa -3' miRNA: 3'- -CCGCUCUUgGAGCuGCcg-UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90050 | 0.66 | 0.89372 |
Target: 5'- gGGCGAu-GCCgaggCGcgccuCGGUGCGCACGUu -3' miRNA: 3'- -CCGCUcuUGGa---GCu----GCCGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 102921 | 0.66 | 0.89372 |
Target: 5'- uGGCGGccGCCgaggagCGGCuGCGCGCGCu- -3' miRNA: 3'- -CCGCUcuUGGa-----GCUGcCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 123035 | 0.66 | 0.89372 |
Target: 5'- uGGCGugggcGGACCUgcCGgccGCGGCGCuGCGCGa -3' miRNA: 3'- -CCGCu----CUUGGA--GC---UGCCGUG-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 103980 | 0.66 | 0.893055 |
Target: 5'- cGGCGAGcuggaggcGGCCgUGGCGGCcguggagGCGCGCc- -3' miRNA: 3'- -CCGCUC--------UUGGaGCUGCCG-------UGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 66593 | 0.66 | 0.89172 |
Target: 5'- cGGcCGAGGcgcucgacuucgccGCCUaCGACGGCGaGCGCc- -3' miRNA: 3'- -CC-GCUCU--------------UGGA-GCUGCCGUgCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 68081 | 0.66 | 0.886974 |
Target: 5'- cGGCGGGcagcGCCUCGA-GGCuCGCGuCGc -3' miRNA: 3'- -CCGCUCu---UGGAGCUgCCGuGCGU-GUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 96221 | 0.66 | 0.886974 |
Target: 5'- uGGCGGcGGCCgCGGCGagGCGCACAa -3' miRNA: 3'- -CCGCUcUUGGaGCUGCcgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 101222 | 0.66 | 0.886974 |
Target: 5'- aGGCGuggacGGGGCCcggCGGgGGCAUGUGCGc -3' miRNA: 3'- -CCGC-----UCUUGGa--GCUgCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 112466 | 0.66 | 0.886974 |
Target: 5'- aGCGAGGacGCCuUCGA-GGCGcCGUACAc -3' miRNA: 3'- cCGCUCU--UGG-AGCUgCCGU-GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 107463 | 0.66 | 0.886974 |
Target: 5'- cGGCGAcGACCUgG-UGGCcaGCGCGCu- -3' miRNA: 3'- -CCGCUcUUGGAgCuGCCG--UGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 118773 | 0.66 | 0.886974 |
Target: 5'- uGCG-GAACCUgGACgcgguGGCGCGCGg-- -3' miRNA: 3'- cCGCuCUUGGAgCUG-----CCGUGCGUgua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 122928 | 0.66 | 0.886287 |
Target: 5'- cGGCGAcGAcgcggacGCCgaCGGCGGCGC-CGCGg -3' miRNA: 3'- -CCGCU-CU-------UGGa-GCUGCCGUGcGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 85383 | 0.66 | 0.886287 |
Target: 5'- cGGCGcGAacgucggcGCCaacgaggUCGACGGCGCGgGCu- -3' miRNA: 3'- -CCGCuCU--------UGG-------AGCUGCCGUGCgUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 109293 | 0.66 | 0.884906 |
Target: 5'- -cCGAGAucgagcggcccgccGCCUCGGCGGCA-GCAg-- -3' miRNA: 3'- ccGCUCU--------------UGGAGCUGCCGUgCGUgua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 104851 | 0.66 | 0.880003 |
Target: 5'- aGGCG-GAccagGCCgcggCGACGGaGCGCGCc- -3' miRNA: 3'- -CCGCuCU----UGGa---GCUGCCgUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 102957 | 0.66 | 0.880003 |
Target: 5'- cGGCGcccGCCgcccaCGACGGCGCGCuGCu- -3' miRNA: 3'- -CCGCucuUGGa----GCUGCCGUGCG-UGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 85775 | 0.66 | 0.880003 |
Target: 5'- uGGCGcuGGAcgcGCaCUCGAUccGCGCGCGCGUg -3' miRNA: 3'- -CCGC--UCU---UG-GAGCUGc-CGUGCGUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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