miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 122613 0.66 0.872811
Target:  5'- aGGCGGugcGGGcCCUCGACcuguuCACGCACAa -3'
miRNA:   3'- -CCGCU---CUU-GGAGCUGcc---GUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122494 0.68 0.780892
Target:  5'- gGGCGAGAcgGCg-CGcCGGCGCGCGgAc -3'
miRNA:   3'- -CCGCUCU--UGgaGCuGCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 121379 0.69 0.742882
Target:  5'- cGGCGAGGagaccGCCuUCGacuuuggggccuGCGGCGCGgGCGg -3'
miRNA:   3'- -CCGCUCU-----UGG-AGC------------UGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 120970 0.69 0.732133
Target:  5'- aGGCGGGGAaCUggagcgggcucaaCGGCGGCAaGCACGUg -3'
miRNA:   3'- -CCGCUCUUgGA-------------GCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 120816 0.72 0.581071
Target:  5'- cGCGAGGugCUgGACGcGC-CGCGCGa -3'
miRNA:   3'- cCGCUCUugGAgCUGC-CGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 119978 0.68 0.799132
Target:  5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3'
miRNA:   3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 119787 0.69 0.739962
Target:  5'- cGGCGAGAcggugacggaccacGCCggcuucCGGCACGCGCu- -3'
miRNA:   3'- -CCGCUCU--------------UGGagcu--GCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 119762 0.67 0.849963
Target:  5'- uGGCGG--ACgUgGcCGGCGCGCGCAUn -3'
miRNA:   3'- -CCGCUcuUGgAgCuGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119113 0.71 0.601427
Target:  5'- cGUGAGccgcgcggccGGCCUCGugGGgGCGCugGUg -3'
miRNA:   3'- cCGCUC----------UUGGAGCugCCgUGCGugUA- -5'
29581 5' -56.5 NC_006151.1 + 119034 0.7 0.683144
Target:  5'- aGGCGGGcGCCaaggaCGGCGGCGC-CGCGg -3'
miRNA:   3'- -CCGCUCuUGGa----GCUGCCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 118773 0.66 0.886974
Target:  5'- uGCG-GAACCUgGACgcgguGGCGCGCGg-- -3'
miRNA:   3'- cCGCuCUUGGAgCUG-----CCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 118222 0.67 0.807147
Target:  5'- uGGCGGGcGCCcggaccaccgggcUCGGCGGCGgGCuCAc -3'
miRNA:   3'- -CCGCUCuUGG-------------AGCUGCCGUgCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 117261 0.67 0.808911
Target:  5'- aGGCGcGGGCCgcgcgcggccgccgcCGACaGCGCGCGCGc -3'
miRNA:   3'- -CCGCuCUUGGa--------------GCUGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 117218 0.67 0.80803
Target:  5'- gGGCGc-GGCgUCGACGaCGCGCGCGUc -3'
miRNA:   3'- -CCGCucUUGgAGCUGCcGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 115135 0.69 0.733114
Target:  5'- cGCGuGcGCCUCGGCcaGCACGCGCc- -3'
miRNA:   3'- cCGCuCuUGGAGCUGc-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 114861 0.67 0.849963
Target:  5'- aGGCGGGGuCCUCGGCcaGGU-CGCugAc -3'
miRNA:   3'- -CCGCUCUuGGAGCUG--CCGuGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 114359 0.66 0.857785
Target:  5'- -uCGAGGACCcCGACgcgcagGGCGCGCuCAUg -3'
miRNA:   3'- ccGCUCUUGGaGCUG------CCGUGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 114326 0.67 0.833733
Target:  5'- -aCGGGGGCCUgcgCGACGuGCGCGUGCu- -3'
miRNA:   3'- ccGCUCUUGGA---GCUGC-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 114096 0.66 0.872811
Target:  5'- gGGCuacuaccuGGGCCUCGGCGGCugcugccccACGUGCGc -3'
miRNA:   3'- -CCGcu------CUUGGAGCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 113510 0.69 0.733114
Target:  5'- -uCGAGGGCUUCGugGCGGaCGCGCGCu- -3'
miRNA:   3'- ccGCUCUUGGAGC--UGCC-GUGCGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.