Results 1 - 20 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29605 | 3' | -54.8 | NC_006151.1 | + | 46800 | 0.66 | 0.943476 |
Target: 5'- cUCGAUGCgGcGCC-CGUCGCCcuCUGCc -3' miRNA: 3'- -GGUUGCGgC-CGGcGUAGUGGuuGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 141232 | 0.66 | 0.943476 |
Target: 5'- gCAGCGaCGGCUGCAcCACgGAggGCg -3' miRNA: 3'- gGUUGCgGCCGGCGUaGUGgUUgaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 57395 | 0.66 | 0.943476 |
Target: 5'- aCCAG-GCCagGGCCGCGUCGaaGACg-- -3' miRNA: 3'- -GGUUgCGG--CCGGCGUAGUggUUGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 58677 | 0.66 | 0.943476 |
Target: 5'- gCCAugaccGCGCCGuGCgCGCcgCGCCAcaGCg-- -3' miRNA: 3'- -GGU-----UGCGGC-CG-GCGuaGUGGU--UGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 71997 | 0.66 | 0.943476 |
Target: 5'- gUAGCGCCGGCCGUu--GCUgaaGACcACg -3' miRNA: 3'- gGUUGCGGCCGGCGuagUGG---UUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 104425 | 0.66 | 0.943476 |
Target: 5'- gCCGcCGCCGGCauggggCGCuUCAgCuACUACg -3' miRNA: 3'- -GGUuGCGGCCG------GCGuAGUgGuUGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 113552 | 0.66 | 0.943476 |
Target: 5'- gCGcCGCgGGcCCGCG-CGCCGuCUACa -3' miRNA: 3'- gGUuGCGgCC-GGCGUaGUGGUuGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 115223 | 0.66 | 0.943476 |
Target: 5'- aUCGugGCCGcuGCCGCcgagacggccucGUCGCCAAagaGCa -3' miRNA: 3'- -GGUugCGGC--CGGCG------------UAGUGGUUga-UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 138913 | 0.66 | 0.943476 |
Target: 5'- gCGAgcgUGCUcGCCGCcacgGUCAUCGGCUGCa -3' miRNA: 3'- gGUU---GCGGcCGGCG----UAGUGGUUGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 139638 | 0.66 | 0.943476 |
Target: 5'- uCCGGCGCCGGCgCGgggGUCG-CGGCggGCg -3' miRNA: 3'- -GGUUGCGGCCG-GCg--UAGUgGUUGa-UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 36656 | 0.66 | 0.943476 |
Target: 5'- cCCucCGCCGGaggggaCCGCGgucgucaccaUCACCAGCa-- -3' miRNA: 3'- -GGuuGCGGCC------GGCGU----------AGUGGUUGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 102699 | 0.66 | 0.943476 |
Target: 5'- cCCGGCGCgGGCgGCGcgGCCGAg--- -3' miRNA: 3'- -GGUUGCGgCCGgCGUagUGGUUgaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 59224 | 0.66 | 0.943018 |
Target: 5'- cCCGGgaacgucUGCCGGCUGCG--GCCGACg-- -3' miRNA: 3'- -GGUU-------GCGGCCGGCGUagUGGUUGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 64289 | 0.66 | 0.943018 |
Target: 5'- -gAGCGCCGcguugucgggcguGCCGCAgcgCGCCGuGCUGg -3' miRNA: 3'- ggUUGCGGC-------------CGGCGUa--GUGGU-UGAUg -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 66576 | 0.66 | 0.941631 |
Target: 5'- cCCGGCGCucgcgcgcgCGGCCGaggcgcucgacuUCGCCGcCUACg -3' miRNA: 3'- -GGUUGCG---------GCCGGCgu----------AGUGGUuGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 97421 | 0.66 | 0.940695 |
Target: 5'- gUCGACgcgcguGCCGGCCaggaggaagcugaggGCGUCGCCgAGCUcggGCa -3' miRNA: 3'- -GGUUG------CGGCCGG---------------CGUAGUGG-UUGA---UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 125269 | 0.66 | 0.938793 |
Target: 5'- cCCGAgcCGCCGGCCGuCAacggCACgGGgcacCUGCg -3' miRNA: 3'- -GGUU--GCGGCCGGC-GUa---GUGgUU----GAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 39009 | 0.66 | 0.938793 |
Target: 5'- nCGGCGCCccgcuccGCCGCcgCGCCGcCUGg -3' miRNA: 3'- gGUUGCGGc------CGGCGuaGUGGUuGAUg -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 90883 | 0.66 | 0.938793 |
Target: 5'- cUCGGCGuucCCGGcCCGCAgccgCugCAGCaGCg -3' miRNA: 3'- -GGUUGC---GGCC-GGCGUa---GugGUUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 49342 | 0.66 | 0.938793 |
Target: 5'- gCCugcGCGCCGGacCCGCGcCGCCAcaaGgUGCu -3' miRNA: 3'- -GGu--UGCGGCC--GGCGUaGUGGU---UgAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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