miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29612 3' -51.2 NC_006151.1 + 116315 0.66 0.99256
Target:  5'- gCCCGAu---GACGCC-GCGCuCGCgCGg -3'
miRNA:   3'- gGGGCUuuuuUUGUGGuCGUG-GCG-GU- -5'
29612 3' -51.2 NC_006151.1 + 54408 0.66 0.99256
Target:  5'- gCCUCGGcgccGAGGCGCUGGCGCgGCg- -3'
miRNA:   3'- -GGGGCUuu--UUUUGUGGUCGUGgCGgu -5'
29612 3' -51.2 NC_006151.1 + 65816 0.66 0.99256
Target:  5'- gCCgCGguGGAugggcggccGCGCCAGCGCgGCCc -3'
miRNA:   3'- -GGgGCuuUUUu--------UGUGGUCGUGgCGGu -5'
29612 3' -51.2 NC_006151.1 + 65113 0.66 0.99256
Target:  5'- gCCCC-AGGAGGACGCCcgucggcgGGCuCCGCg- -3'
miRNA:   3'- -GGGGcUUUUUUUGUGG--------UCGuGGCGgu -5'
29612 3' -51.2 NC_006151.1 + 68845 0.66 0.99256
Target:  5'- gCUCGAGGcgccgcgcGAcGCGuCCAGCAgCGCCGg -3'
miRNA:   3'- gGGGCUUU--------UUuUGU-GGUCGUgGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 83356 0.66 0.99256
Target:  5'- uCCCCGGcgcgcGCGCgGGCGCgcaggCGCCGc -3'
miRNA:   3'- -GGGGCUuuuuuUGUGgUCGUG-----GCGGU- -5'
29612 3' -51.2 NC_006151.1 + 102906 0.66 0.99256
Target:  5'- gCCUCGucGAcu-CGCUGGCGgCCGCCGa -3'
miRNA:   3'- -GGGGCuuUUuuuGUGGUCGU-GGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 111242 0.66 0.99256
Target:  5'- gCCCCaGGAGGGuguGCAgCAGCGagGCCGg -3'
miRNA:   3'- -GGGG-CUUUUUu--UGUgGUCGUggCGGU- -5'
29612 3' -51.2 NC_006151.1 + 112585 0.66 0.99256
Target:  5'- gCCCgCGGGcuucguGGAGGcCGCCgcGGCGCCGCUg -3'
miRNA:   3'- -GGG-GCUU------UUUUU-GUGG--UCGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 130583 0.66 0.99256
Target:  5'- aUCUGGAGGuggugcagcGGCACCAGCGCCucCCAg -3'
miRNA:   3'- gGGGCUUUUu--------UUGUGGUCGUGGc-GGU- -5'
29612 3' -51.2 NC_006151.1 + 8323 0.66 0.99256
Target:  5'- cCCCCGggGc--GCGCgGGCcucgaucgcgcCCGCCGg -3'
miRNA:   3'- -GGGGCuuUuuuUGUGgUCGu----------GGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 113101 0.66 0.99256
Target:  5'- gCCaCCGggGGcggggccgcGGACGCgGaCGCCGCCGg -3'
miRNA:   3'- -GG-GGCuuUU---------UUUGUGgUcGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 108380 0.66 0.99256
Target:  5'- -gCCGAAG-----GCCGguGCACCGCCGg -3'
miRNA:   3'- ggGGCUUUuuuugUGGU--CGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 85151 0.66 0.99256
Target:  5'- aCCgCGugcggcAGGGgGCCGGCGCCGCgGg -3'
miRNA:   3'- -GGgGCuuu---UUUUgUGGUCGUGGCGgU- -5'
29612 3' -51.2 NC_006151.1 + 68635 0.66 0.99256
Target:  5'- gCCCGcgcgu--CGCCGGCuccACUGCCAc -3'
miRNA:   3'- gGGGCuuuuuuuGUGGUCG---UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 64493 0.66 0.99256
Target:  5'- gCCCGc---GGGCGCgGGCggcgggcgcgcGCCGCCAa -3'
miRNA:   3'- gGGGCuuuuUUUGUGgUCG-----------UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 63775 0.66 0.99256
Target:  5'- cCCCCGcgucgccaggcGGGGucggccguCGCCAGCGCCucGCCGg -3'
miRNA:   3'- -GGGGC-----------UUUUuuu-----GUGGUCGUGG--CGGU- -5'
29612 3' -51.2 NC_006151.1 + 54675 0.66 0.99256
Target:  5'- aCCUGGcc-GGGCACCuGCGCguCGCCGg -3'
miRNA:   3'- gGGGCUuuuUUUGUGGuCGUG--GCGGU- -5'
29612 3' -51.2 NC_006151.1 + 125904 0.66 0.992454
Target:  5'- cUCCUGGAcuacagcGAGAu--CCAGCGCCGCa- -3'
miRNA:   3'- -GGGGCUU-------UUUUuguGGUCGUGGCGgu -5'
29612 3' -51.2 NC_006151.1 + 85223 0.66 0.992454
Target:  5'- uCCCCGAGuaccuGGACgcgcugaGCCAgGCGCUgGCCGa -3'
miRNA:   3'- -GGGGCUUuu---UUUG-------UGGU-CGUGG-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.