miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 3' -51.5 NC_006151.1 + 104287 0.66 0.989617
Target:  5'- cCGCCGCUGC-AGGcGCUGCAGcGGc -3'
miRNA:   3'- cGCGGCGGCGgUUUaUGAUGUCaUCu -5'
29614 3' -51.5 NC_006151.1 + 17328 0.66 0.989617
Target:  5'- gGCGCCG-CGUCAGcucGUGCgucuCGGUGGu -3'
miRNA:   3'- -CGCGGCgGCGGUU---UAUGau--GUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 17110 0.66 0.989617
Target:  5'- gGCGCCGggggcuCCGgCGgcGGUGCUGCGGgAGGc -3'
miRNA:   3'- -CGCGGC------GGCgGU--UUAUGAUGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 79685 0.66 0.989617
Target:  5'- uCGCCGCCGCgGGG-ACcGCAGccGAa -3'
miRNA:   3'- cGCGGCGGCGgUUUaUGaUGUCauCU- -5'
29614 3' -51.5 NC_006151.1 + 57113 0.66 0.989617
Target:  5'- aGCGCgCGCCGCCGcgcccgGCGGUc-- -3'
miRNA:   3'- -CGCG-GCGGCGGUuuaugaUGUCAucu -5'
29614 3' -51.5 NC_006151.1 + 23543 0.66 0.98948
Target:  5'- gGCGUCGUCGCCAAAgACgagcacgacgaugUACAGg--- -3'
miRNA:   3'- -CGCGGCGGCGGUUUaUG-------------AUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 54692 0.66 0.988177
Target:  5'- cGCGUCGCCGgCAGcGUGCUGggcCAGggccUGGAc -3'
miRNA:   3'- -CGCGGCGGCgGUU-UAUGAU---GUC----AUCU- -5'
29614 3' -51.5 NC_006151.1 + 57309 0.66 0.988177
Target:  5'- gGCGgCGCgGCCGAAgccGCUGCGcgacgGGAa -3'
miRNA:   3'- -CGCgGCGgCGGUUUa--UGAUGUca---UCU- -5'
29614 3' -51.5 NC_006151.1 + 59930 0.66 0.988177
Target:  5'- gGCGCgCGCCGUCAGcgGCggcucGCAGc--- -3'
miRNA:   3'- -CGCG-GCGGCGGUUuaUGa----UGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 23755 0.66 0.986586
Target:  5'- -gGCCGCCGUCAAAgaac-CAGgcGAc -3'
miRNA:   3'- cgCGGCGGCGGUUUaugauGUCauCU- -5'
29614 3' -51.5 NC_006151.1 + 77842 0.66 0.986586
Target:  5'- -aGCCGCUG-CAGGUGCUgACGGaGGGg -3'
miRNA:   3'- cgCGGCGGCgGUUUAUGA-UGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 5699 0.66 0.986586
Target:  5'- gGCGCUGCgGCCAcc-GCUGCuggcugugcuGGUGGc -3'
miRNA:   3'- -CGCGGCGgCGGUuuaUGAUG----------UCAUCu -5'
29614 3' -51.5 NC_006151.1 + 56353 0.66 0.986586
Target:  5'- cGCGCC-CCGCCGgcgcgGAaGCUACGGc--- -3'
miRNA:   3'- -CGCGGcGGCGGU-----UUaUGAUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 81887 0.66 0.986586
Target:  5'- aGCGCCGgCGCCGAGgcGCgcCGGUc-- -3'
miRNA:   3'- -CGCGGCgGCGGUUUa-UGauGUCAucu -5'
29614 3' -51.5 NC_006151.1 + 130640 0.66 0.986586
Target:  5'- aGCGCCGCCgagGCCGc---CUGCGGcguGAa -3'
miRNA:   3'- -CGCGGCGG---CGGUuuauGAUGUCau-CU- -5'
29614 3' -51.5 NC_006151.1 + 11928 0.66 0.986249
Target:  5'- cGCGCCGCCGCCGccuccucauCUuucGUGGu -3'
miRNA:   3'- -CGCGGCGGCGGUuuau-----GAuguCAUCu -5'
29614 3' -51.5 NC_006151.1 + 89719 0.66 0.984836
Target:  5'- gGCGgCGCCgGCCGcg-GCcGCGGUGGu -3'
miRNA:   3'- -CGCgGCGG-CGGUuuaUGaUGUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 55593 0.66 0.984836
Target:  5'- cGUGCCGCCGUaCGAGUcggAC-GUGGAg -3'
miRNA:   3'- -CGCGGCGGCG-GUUUAugaUGuCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 15918 0.66 0.984836
Target:  5'- cCGCCGCCGCCccGUGagGCGGg--- -3'
miRNA:   3'- cGCGGCGGCGGuuUAUgaUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 37567 0.66 0.984836
Target:  5'- gGgGCCGCCGgCGAGgccauguccugGCUGCAGa--- -3'
miRNA:   3'- -CgCGGCGGCgGUUUa----------UGAUGUCaucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.