miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 142295 0.66 0.657644
Target:  5'- cCGGCCGGgaCGAGAGCgagcgCCguaUGGGGGCCc -3'
miRNA:   3'- -GUCGGCUggGCUCUCG-----GG---GCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 14645 0.66 0.657644
Target:  5'- gCGGCCgGGCUCGGGuccGGUUCCGggucggcgucggGGAGCCu -3'
miRNA:   3'- -GUCGG-CUGGGCUC---UCGGGGC------------UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 4143 0.66 0.657644
Target:  5'- gGGCCGGcCCCGGGGaucGCgUCGcGGAGCg -3'
miRNA:   3'- gUCGGCU-GGGCUCU---CGgGGC-UCUCGg -5'
29615 3' -62.2 NC_006151.1 + 9897 0.66 0.657644
Target:  5'- cCGGCgG-UCCGGGAagaaaGCCCCGGcgccucGGGCCu -3'
miRNA:   3'- -GUCGgCuGGGCUCU-----CGGGGCU------CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 17202 0.66 0.657644
Target:  5'- gGGCCGugCCccGGGCCCCc-GAGUUc -3'
miRNA:   3'- gUCGGCugGGcuCUCGGGGcuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 28308 0.66 0.657644
Target:  5'- uGGCCGGCgCGu---CCCCGGGGcGCCc -3'
miRNA:   3'- gUCGGCUGgGCucucGGGGCUCU-CGG- -5'
29615 3' -62.2 NC_006151.1 + 30738 0.66 0.657644
Target:  5'- -cGCgGGCCCG-GAGUgCCGcGGGCg -3'
miRNA:   3'- guCGgCUGGGCuCUCGgGGCuCUCGg -5'
29615 3' -62.2 NC_006151.1 + 50018 0.66 0.657644
Target:  5'- -cGCgCGGCCCGcgcGGcGcCCCCGGGcgcGGCCa -3'
miRNA:   3'- guCG-GCUGGGC---UCuC-GGGGCUC---UCGG- -5'
29615 3' -62.2 NC_006151.1 + 59941 0.66 0.657644
Target:  5'- uCAGCggCGGCUCGc-AGCCCuCGAGcGCCa -3'
miRNA:   3'- -GUCG--GCUGGGCucUCGGG-GCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 61845 0.66 0.657644
Target:  5'- uGGCCGcCCCGGGGaCCCUGAu-GCUc -3'
miRNA:   3'- gUCGGCuGGGCUCUcGGGGCUcuCGG- -5'
29615 3' -62.2 NC_006151.1 + 55447 0.66 0.657644
Target:  5'- gGGaCCGGCgCCGccGGCCCCGccggGGGGCg -3'
miRNA:   3'- gUC-GGCUG-GGCucUCGGGGC----UCUCGg -5'
29615 3' -62.2 NC_006151.1 + 53412 0.66 0.657644
Target:  5'- aCGGCCGugagcaggugccGCCCGAGcAGCCC----GGCCu -3'
miRNA:   3'- -GUCGGC------------UGGGCUC-UCGGGgcucUCGG- -5'
29615 3' -62.2 NC_006151.1 + 64816 0.66 0.656665
Target:  5'- aAGCCGGCggccagcuccuccUCGAGGauGUCCCcggcGAGGGCCu -3'
miRNA:   3'- gUCGGCUG-------------GGCUCU--CGGGG----CUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 32871 0.66 0.64785
Target:  5'- aGGcCCGACCCGcgcggGGGGCCCCcuccuGucGCCu -3'
miRNA:   3'- gUC-GGCUGGGC-----UCUCGGGGcu---Cu-CGG- -5'
29615 3' -62.2 NC_006151.1 + 41126 0.66 0.64785
Target:  5'- gUAGauGGuCCCGAGGGUCCCGGuGGUCc -3'
miRNA:   3'- -GUCggCU-GGGCUCUCGGGGCUcUCGG- -5'
29615 3' -62.2 NC_006151.1 + 51214 0.66 0.64785
Target:  5'- aGGCCG-CCCGcGGGCCCgCGcAG-GCg -3'
miRNA:   3'- gUCGGCuGGGCuCUCGGG-GC-UCuCGg -5'
29615 3' -62.2 NC_006151.1 + 78131 0.66 0.64785
Target:  5'- gCGGCgGGCCgCGGGcGCCUCGGacGAcGCCu -3'
miRNA:   3'- -GUCGgCUGG-GCUCuCGGGGCU--CU-CGG- -5'
29615 3' -62.2 NC_006151.1 + 89131 0.66 0.64785
Target:  5'- gCGGCgGGaCCGGGGGCgUCGAGAccgcGCCc -3'
miRNA:   3'- -GUCGgCUgGGCUCUCGgGGCUCU----CGG- -5'
29615 3' -62.2 NC_006151.1 + 13686 0.66 0.64785
Target:  5'- -cGCCGGCCaauGcGGGCuCCCGGGAcGCg -3'
miRNA:   3'- guCGGCUGGg--CuCUCG-GGGCUCU-CGg -5'
29615 3' -62.2 NC_006151.1 + 96409 0.66 0.64785
Target:  5'- gCGGCCGccACCgCGGggaucagcgcGAGCUCCGGcgaggcGAGCCa -3'
miRNA:   3'- -GUCGGC--UGG-GCU----------CUCGGGGCU------CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.