miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 1804 0.65 0.884906
Target:  5'- -gGGCCGgGGAggcAGGCGCCGGGgaggcaagcgccgcCGGGc -3'
miRNA:   3'- agUCGGUaUCU---UCUGUGGCCC--------------GCCCu -5'
29615 5' -56.7 NC_006151.1 + 134969 0.66 0.880003
Target:  5'- cUCGGCCAgccuccGGGCcuucUCGGGCGGGc -3'
miRNA:   3'- -AGUCGGUaucu--UCUGu---GGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 8594 0.66 0.880003
Target:  5'- -gGGCCGgugcgAGuauGGGgGCCGGuGCGGGu -3'
miRNA:   3'- agUCGGUa----UCu--UCUgUGGCC-CGCCCu -5'
29615 5' -56.7 NC_006151.1 + 2279 0.66 0.880003
Target:  5'- aCGGCCGgc-GGGGCGcCCGcGGCGGcGAc -3'
miRNA:   3'- aGUCGGUaucUUCUGU-GGC-CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 4208 0.66 0.879294
Target:  5'- -gGGCCcgAGGgcggccgGGGCG-CGGGCGGGc -3'
miRNA:   3'- agUCGGuaUCU-------UCUGUgGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 20455 0.66 0.877868
Target:  5'- -gGGCUcgGGGGuGGCGCCGGucccccgggggggcGCGGGGg -3'
miRNA:   3'- agUCGGuaUCUU-CUGUGGCC--------------CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 117178 0.66 0.872811
Target:  5'- --cGCgGUAGAAGGgcCGCCGGG-GGGc -3'
miRNA:   3'- aguCGgUAUCUUCU--GUGGCCCgCCCu -5'
29615 5' -56.7 NC_006151.1 + 109453 0.66 0.872811
Target:  5'- gCGGCCGgccccGACGCCGGaGCGGc- -3'
miRNA:   3'- aGUCGGUaucuuCUGUGGCC-CGCCcu -5'
29615 5' -56.7 NC_006151.1 + 102419 0.66 0.872811
Target:  5'- gCGGCCcgcgaacGAGGccauGCACCGGGCGcuGGAc -3'
miRNA:   3'- aGUCGGuau----CUUC----UGUGGCCCGC--CCU- -5'
29615 5' -56.7 NC_006151.1 + 78563 0.66 0.872811
Target:  5'- gCAcGCCcgGGAGGACGCggcgaCGGGCcuGGAg -3'
miRNA:   3'- aGU-CGGuaUCUUCUGUG-----GCCCGc-CCU- -5'
29615 5' -56.7 NC_006151.1 + 58194 0.66 0.87208
Target:  5'- cUCAcGCCGUGGGccaccAGGCagucgaaGCCGcGCGGGAc -3'
miRNA:   3'- -AGU-CGGUAUCU-----UCUG-------UGGCcCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 111667 0.66 0.865403
Target:  5'- gCGGCCAgGGggGcguCGgCGGGCcGGAa -3'
miRNA:   3'- aGUCGGUaUCuuCu--GUgGCCCGcCCU- -5'
29615 5' -56.7 NC_006151.1 + 93547 0.66 0.865403
Target:  5'- aUCAgcGCCAUGGGaaAGucCGCCgcggGGGCGGGc -3'
miRNA:   3'- -AGU--CGGUAUCU--UCu-GUGG----CCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 82354 0.66 0.863896
Target:  5'- --cGCCGUGGuguacgugcgccGGACGCCGGGCGc-- -3'
miRNA:   3'- aguCGGUAUCu-----------UCUGUGGCCCGCccu -5'
29615 5' -56.7 NC_006151.1 + 71068 0.66 0.858556
Target:  5'- cCGGCCGUGGucuucuaccaccacGGCGCCgcGGGCGcGGGc -3'
miRNA:   3'- aGUCGGUAUCuu------------CUGUGG--CCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 57824 0.66 0.857785
Target:  5'- cCAGCCAggccccgcGGAGGGCGCaCGGGUGc-- -3'
miRNA:   3'- aGUCGGUa-------UCUUCUGUG-GCCCGCccu -5'
29615 5' -56.7 NC_006151.1 + 5031 0.66 0.857785
Target:  5'- -gGGCCGgggccGggGAgGCCGcGGCGGaGGa -3'
miRNA:   3'- agUCGGUau---CuuCUgUGGC-CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 33947 0.66 0.857785
Target:  5'- --cGCCcc-GggGGCuCgGGGCGGGAc -3'
miRNA:   3'- aguCGGuauCuuCUGuGgCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 96836 0.66 0.857785
Target:  5'- --cGCCAaUGGggGAaa--GGGCGGGGa -3'
miRNA:   3'- aguCGGU-AUCuuCUguggCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 27432 0.66 0.849963
Target:  5'- cCGGuCCAUGGGcgcggcGGACGCggUGGGuCGGGGg -3'
miRNA:   3'- aGUC-GGUAUCU------UCUGUG--GCCC-GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.