miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 3' -59.2 NC_006151.1 + 46873 0.66 0.771694
Target:  5'- aGCUcgUcgggaUCCCC-CCgCUCCGCUaCCAUc -3'
miRNA:   3'- -UGGuaA-----AGGGGaGGgGAGGCGA-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 61419 0.66 0.771694
Target:  5'- cGCCGUccUCCUCggCCCCgCCGCggcgcCCGCc -3'
miRNA:   3'- -UGGUAa-AGGGGa-GGGGaGGCGa----GGUG- -5'
29621 3' -59.2 NC_006151.1 + 58540 0.66 0.770766
Target:  5'- cGCCGcccUCCCCggucgucUCCUCUUCGCcgCCGCc -3'
miRNA:   3'- -UGGUaa-AGGGG-------AGGGGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 40481 0.66 0.762359
Target:  5'- gGCCc--UCCuCCUCUCCUUCucCUCCGCg -3'
miRNA:   3'- -UGGuaaAGG-GGAGGGGAGGc-GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11563 0.66 0.762359
Target:  5'- cCCGg--CCCCgacaCCCCcCCGC-CCGCc -3'
miRNA:   3'- uGGUaaaGGGGa---GGGGaGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 112720 0.66 0.762359
Target:  5'- cGCCAaggCCCUggccugCCCC-CCGUgcgCCACg -3'
miRNA:   3'- -UGGUaaaGGGGa-----GGGGaGGCGa--GGUG- -5'
29621 3' -59.2 NC_006151.1 + 124610 0.66 0.762359
Target:  5'- uCCGUguaCCCCUacgaCUCCUUCGCccugUCCACg -3'
miRNA:   3'- uGGUAaa-GGGGA----GGGGAGGCG----AGGUG- -5'
29621 3' -59.2 NC_006151.1 + 1710 0.66 0.752912
Target:  5'- cGCCGcUUCCaCCaccgccgCCaCCUCCGCcgCCGCc -3'
miRNA:   3'- -UGGUaAAGG-GGa------GG-GGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 69490 0.66 0.752912
Target:  5'- cGCCucgagcgCCCCcgcgccgCCuCCUCCGCcgCCGCg -3'
miRNA:   3'- -UGGuaaa---GGGGa------GG-GGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 94661 0.66 0.752912
Target:  5'- gGCCAgcgggugCCCggcgggcagCUCCCCgaaggCCGCggCCACg -3'
miRNA:   3'- -UGGUaaa----GGG---------GAGGGGa----GGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 36990 0.66 0.752912
Target:  5'- cCCGg--CCCgCUCgCCCUCCGCcCCcCg -3'
miRNA:   3'- uGGUaaaGGG-GAG-GGGAGGCGaGGuG- -5'
29621 3' -59.2 NC_006151.1 + 43079 0.66 0.752912
Target:  5'- cGCCGcgugUCCgCUCCCCcCCGUgUCGCg -3'
miRNA:   3'- -UGGUaa--AGGgGAGGGGaGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 40330 0.66 0.74336
Target:  5'- uCCGUcuucucUCCCCUCgCCCUCgGC-CCGg -3'
miRNA:   3'- uGGUAa-----AGGGGAG-GGGAGgCGaGGUg -5'
29621 3' -59.2 NC_006151.1 + 47090 0.66 0.74336
Target:  5'- cCCGg--CCCCgcacUCaCCUCCGCUCCuGCu -3'
miRNA:   3'- uGGUaaaGGGGa---GG-GGAGGCGAGG-UG- -5'
29621 3' -59.2 NC_006151.1 + 11615 0.66 0.74336
Target:  5'- gGCCAUcaacCCCCUCCCCcacCCaC-CCGCa -3'
miRNA:   3'- -UGGUAaa--GGGGAGGGGa--GGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 26539 0.66 0.733713
Target:  5'- uUCAUcUUCCCCgUCCCCgCCGUcgUCCGa -3'
miRNA:   3'- uGGUA-AAGGGG-AGGGGaGGCG--AGGUg -5'
29621 3' -59.2 NC_006151.1 + 14780 0.66 0.733713
Target:  5'- cACCA---CCCCgccgaCCCC-CCGCUCgACc -3'
miRNA:   3'- -UGGUaaaGGGGa----GGGGaGGCGAGgUG- -5'
29621 3' -59.2 NC_006151.1 + 47909 0.66 0.733713
Target:  5'- cGCCucgaugcgCCCCaucgcgCCCCguUCCGCUUCGCc -3'
miRNA:   3'- -UGGuaaa----GGGGa-----GGGG--AGGCGAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 109934 0.66 0.733713
Target:  5'- cGCCGg--CCUCUCCCCUgggcggccucggCCGCgucuggcCCACc -3'
miRNA:   3'- -UGGUaaaGGGGAGGGGA------------GGCGa------GGUG- -5'
29621 3' -59.2 NC_006151.1 + 31345 0.66 0.733713
Target:  5'- cGCCGUgggCCCgaCCCCggUCCGCgCCGg -3'
miRNA:   3'- -UGGUAaa-GGGgaGGGG--AGGCGaGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.