miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 3' -58.3 NC_006151.1 + 45146 0.66 0.820458
Target:  5'- --aGGGGGuUGGauGGACGGcuggauGGACGGAc -3'
miRNA:   3'- cgaCCCUC-ACC--CCUGCCu-----UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 78652 0.66 0.820458
Target:  5'- aGCUGGugGAGgcggccGGGGcGCGGGugcuGGACGGGc -3'
miRNA:   3'- -CGACC--CUCa-----CCCC-UGCCU----UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 41309 0.66 0.820458
Target:  5'- --aGGGGG-GGGGGgGGggGugGuGGu -3'
miRNA:   3'- cgaCCCUCaCCCCUgCCuuCugC-CUu -5'
29622 3' -58.3 NC_006151.1 + 34396 0.66 0.820458
Target:  5'- --aGaGGGGUGGGGGagaggaGGggGugGGu- -3'
miRNA:   3'- cgaC-CCUCACCCCUg-----CCuuCugCCuu -5'
29622 3' -58.3 NC_006151.1 + 5487 0.66 0.820458
Target:  5'- aGUU-GGAGuUGGGGuuGGAggAGACGGGg -3'
miRNA:   3'- -CGAcCCUC-ACCCCugCCU--UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 110593 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 110633 0.66 0.811877
Target:  5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3'
miRNA:   3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5'
29622 3' -58.3 NC_006151.1 + 121554 0.66 0.811877
Target:  5'- --gGGGAGgaggaGGGGAa-GggGACGGGc -3'
miRNA:   3'- cgaCCCUCa----CCCCUgcCuuCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 96710 0.66 0.811877
Target:  5'- cGCcGGGGGcggcGGcGGACGaGGAGGCGGc- -3'
miRNA:   3'- -CGaCCCUCa---CC-CCUGC-CUUCUGCCuu -5'
29622 3' -58.3 NC_006151.1 + 41194 0.66 0.811877
Target:  5'- --gGGGGGUGGGGGgGGAaagagAGAaaGAGa -3'
miRNA:   3'- cgaCCCUCACCCCUgCCU-----UCUgcCUU- -5'
29622 3' -58.3 NC_006151.1 + 18130 0.66 0.809271
Target:  5'- cGCUGGGGucgaacguguccauGUcggcGGGGGCGGc-GGCGGGc -3'
miRNA:   3'- -CGACCCU--------------CA----CCCCUGCCuuCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 44312 0.66 0.803135
Target:  5'- uGCgaagGGGAGgggaaGGGGAaaaGGAgaggagggccgcGGACGGGu -3'
miRNA:   3'- -CGa---CCCUCa----CCCCUg--CCU------------UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 11732 0.66 0.803135
Target:  5'- --gGGGAGcGGGGGugaGGggGAgGGGu -3'
miRNA:   3'- cgaCCCUCaCCCCUg--CCuuCUgCCUu -5'
29622 3' -58.3 NC_006151.1 + 41500 0.66 0.794242
Target:  5'- cGCgagGGGAGccaaUGGGG-CGGgcGccGCGGAGc -3'
miRNA:   3'- -CGa--CCCUC----ACCCCuGCCuuC--UGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16637 0.66 0.794242
Target:  5'- --gGGGAGUccgGGGGAgucCGGggGAgucCGGGGg -3'
miRNA:   3'- cgaCCCUCA---CCCCU---GCCuuCU---GCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16597 0.66 0.794242
Target:  5'- --gGGGAGUccgGGGGAgucCGGggGAgucCGGGGg -3'
miRNA:   3'- cgaCCCUCA---CCCCU---GCCuuCU---GCCUU- -5'
29622 3' -58.3 NC_006151.1 + 44272 0.66 0.785205
Target:  5'- uGgaGGGAGcGGGGaaauGCGGAacAGGgGGGAa -3'
miRNA:   3'- -CgaCCCUCaCCCC----UGCCU--UCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 33044 0.66 0.784294
Target:  5'- --gGGGAGggGGGGaugcugccGCGGGuggcaugAGACGGAGg -3'
miRNA:   3'- cgaCCCUCa-CCCC--------UGCCU-------UCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 80211 0.66 0.776033
Target:  5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3'
miRNA:   3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 80166 0.66 0.776033
Target:  5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3'
miRNA:   3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.