miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29630 3' -62.9 NC_006151.1 + 133159 0.66 0.612322
Target:  5'- cGGCGGcGCgGGCgUGGgccUCGGCCACgCGu -3'
miRNA:   3'- -UCGCCcUGgCCG-ACC---AGCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 75399 0.66 0.612322
Target:  5'- gGGCGGGugCGuGCgcgGGUCcgGGagGCCCGg -3'
miRNA:   3'- -UCGCCCugGC-CGa--CCAG--CUggUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 127266 0.66 0.612322
Target:  5'- cGCGGuGGCCGGUgaGGUCGAUgACg-- -3'
miRNA:   3'- uCGCC-CUGGCCGa-CCAGCUGgUGggu -5'
29630 3' -62.9 NC_006151.1 + 142016 0.66 0.612322
Target:  5'- gGGCGGGugUGGCaccacgugGGUgcaucUGACC-CCCu -3'
miRNA:   3'- -UCGCCCugGCCGa-------CCA-----GCUGGuGGGu -5'
29630 3' -62.9 NC_006151.1 + 33262 0.66 0.612322
Target:  5'- gGGUGGGGCggUGGC-GG-CGGCCaucGCCCGa -3'
miRNA:   3'- -UCGCCCUG--GCCGaCCaGCUGG---UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 66464 0.66 0.612322
Target:  5'- cGGUGGucCCGGC-GGUCGGCaCGCUg- -3'
miRNA:   3'- -UCGCCcuGGCCGaCCAGCUG-GUGGgu -5'
29630 3' -62.9 NC_006151.1 + 75463 0.66 0.612322
Target:  5'- uAGCGGucggcGGCCGGCUuGaaGACC-CCCAg -3'
miRNA:   3'- -UCGCC-----CUGGCCGAcCagCUGGuGGGU- -5'
29630 3' -62.9 NC_006151.1 + 126386 0.66 0.612322
Target:  5'- cAGCGGGcCCGcGCUGc-UGGCCAgCCGc -3'
miRNA:   3'- -UCGCCCuGGC-CGACcaGCUGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 80333 0.66 0.602546
Target:  5'- uGGgGGGACCggGGCgagGG-CGGcucuCCGCCCGu -3'
miRNA:   3'- -UCgCCCUGG--CCGa--CCaGCU----GGUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 101919 0.66 0.602546
Target:  5'- aAGCGGcGCCGGCccccgUGGcCGGCgAgCCAg -3'
miRNA:   3'- -UCGCCcUGGCCG-----ACCaGCUGgUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 117261 0.66 0.602546
Target:  5'- aGGCGcGGGCCGcGCg---CGGCCGCCg- -3'
miRNA:   3'- -UCGC-CCUGGC-CGaccaGCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 106194 0.66 0.602546
Target:  5'- cGCuGGAgCCGGC-GGUgCGGCuCGCCCu -3'
miRNA:   3'- uCGcCCU-GGCCGaCCA-GCUG-GUGGGu -5'
29630 3' -62.9 NC_006151.1 + 127381 0.66 0.583062
Target:  5'- cGCGGGGgUGGCgGGggccgCGGCCgagucgacgggaGCCCGc -3'
miRNA:   3'- uCGCCCUgGCCGaCCa----GCUGG------------UGGGU- -5'
29630 3' -62.9 NC_006151.1 + 55442 0.66 0.583062
Target:  5'- cGGaCGGGACCGGCgccGcCGGCCccGCCgGg -3'
miRNA:   3'- -UC-GCCCUGGCCGac-CaGCUGG--UGGgU- -5'
29630 3' -62.9 NC_006151.1 + 71982 0.66 0.583062
Target:  5'- cGGCGGGGgCaGCUGGUagcGCCGgCCGu -3'
miRNA:   3'- -UCGCCCUgGcCGACCAgc-UGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 2455 0.66 0.573366
Target:  5'- cAGCGGGgcGCCGaGCccccagcGGUUGGCCGCgCGg -3'
miRNA:   3'- -UCGCCC--UGGC-CGa------CCAGCUGGUGgGU- -5'
29630 3' -62.9 NC_006151.1 + 10994 0.66 0.573366
Target:  5'- gAGCGGG-CCGGg-GGcccCGGCuCGCCCGc -3'
miRNA:   3'- -UCGCCCuGGCCgaCCa--GCUG-GUGGGU- -5'
29630 3' -62.9 NC_006151.1 + 27665 0.66 0.573366
Target:  5'- uGGauGGAUugaaUGGgUGGUCGACCAgCCGg -3'
miRNA:   3'- -UCgcCCUG----GCCgACCAGCUGGUgGGU- -5'
29630 3' -62.9 NC_006151.1 + 118877 0.66 0.573366
Target:  5'- cAGCGGcGGCgCGGC-GGcgacgCGGCCGCCg- -3'
miRNA:   3'- -UCGCC-CUG-GCCGaCCa----GCUGGUGGgu -5'
29630 3' -62.9 NC_006151.1 + 59424 0.66 0.573366
Target:  5'- cAGCGGcGCCaGCUcgGcGUCGGCCGCCg- -3'
miRNA:   3'- -UCGCCcUGGcCGA--C-CAGCUGGUGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.