Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29631 | 3' | -62.2 | NC_006151.1 | + | 83382 | 0.66 | 0.652612 |
Target: 5'- gCGCCGcaGGUGCuc-GUCCGGGUCcaGCg -3' miRNA: 3'- -GCGGC--CCACGcacUAGGCCCGGcaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 82353 | 0.71 | 0.363946 |
Target: 5'- cCGCCGuGGUGUacGUGcgCCGGacGCCGgGCg -3' miRNA: 3'- -GCGGC-CCACG--CACuaGGCC--CGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 81566 | 0.7 | 0.409225 |
Target: 5'- gGCCGuGGUGCGgagcagGGUCUcgcgcgcgucgccgGGGCCGccgGCg -3' miRNA: 3'- gCGGC-CCACGCa-----CUAGG--------------CCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 81186 | 0.67 | 0.594143 |
Target: 5'- aCGCCGccgaGCGUGuacgCCGGGCCGcaguccggGCg -3' miRNA: 3'- -GCGGCcca-CGCACua--GGCCCGGCa-------CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 78110 | 0.66 | 0.623351 |
Target: 5'- gGCCGGG-GCGgacgccAUCCugcggcGGGCCGcggGCg -3' miRNA: 3'- gCGGCCCaCGCac----UAGG------CCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 77221 | 0.69 | 0.463154 |
Target: 5'- cCGCCGcGUGUGUGcgCCGGGaggcgccccCCG-GCg -3' miRNA: 3'- -GCGGCcCACGCACuaGGCCC---------GGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 76340 | 0.69 | 0.450842 |
Target: 5'- gGCCGGGUGCGgcccgucgcgcgcGAUCaucGGCUGcUGCa -3' miRNA: 3'- gCGGCCCACGCa------------CUAGgc-CCGGC-ACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 75399 | 0.73 | 0.286784 |
Target: 5'- gGgCGGGUGCGUGcgcggGUCCGGGaggcCCG-GCg -3' miRNA: 3'- gCgGCCCACGCAC-----UAGGCCC----GGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 75110 | 0.66 | 0.623351 |
Target: 5'- uGCCGGGcGCcagcagcUGGUCgGcGGCCGgcgGCg -3' miRNA: 3'- gCGGCCCaCGc------ACUAGgC-CCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 74133 | 0.69 | 0.454341 |
Target: 5'- uGCgCGGGUGCagcgGGUgCCGGGggucguCCGUGCc -3' miRNA: 3'- gCG-GCCCACGca--CUA-GGCCC------GGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 73047 | 0.67 | 0.574787 |
Target: 5'- gCGCgguggGGGUGCGcggGGUCCGcguGGCUGUGg -3' miRNA: 3'- -GCGg----CCCACGCa--CUAGGC---CCGGCACg -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 60272 | 0.67 | 0.569007 |
Target: 5'- cCGCCGcacGCGccccguggacUGGuagacggaggccaugUCCGGGCCGUGCg -3' miRNA: 3'- -GCGGCccaCGC----------ACU---------------AGGCCCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 59143 | 0.66 | 0.633108 |
Target: 5'- gCGcCCGcGG-GCG-GGUCCaGGCCG-GCg -3' miRNA: 3'- -GC-GGC-CCaCGCaCUAGGcCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 58875 | 0.73 | 0.280447 |
Target: 5'- gCGCCGGGUccguccaggccGUGUaGAUCCcGGCCGcGCa -3' miRNA: 3'- -GCGGCCCA-----------CGCA-CUAGGcCCGGCaCG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 58651 | 0.68 | 0.546044 |
Target: 5'- gCGCCGGGagggcgcgGCGcagggccgccaUGA-CCGcGCCGUGCg -3' miRNA: 3'- -GCGGCCCa-------CGC-----------ACUaGGCcCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 56309 | 0.71 | 0.363946 |
Target: 5'- aCGCCGcgcGGUGCcUGAgcCUGGGCCGgugGCu -3' miRNA: 3'- -GCGGC---CCACGcACUa-GGCCCGGCa--CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 56165 | 0.7 | 0.428464 |
Target: 5'- cCGCCGaGGaccGCGUGcUCuCGcuGGCCGUGCc -3' miRNA: 3'- -GCGGC-CCa--CGCACuAG-GC--CCGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 54696 | 0.66 | 0.662345 |
Target: 5'- uCGCCGGcaGCGUG--CUGGGCCaggGCc -3' miRNA: 3'- -GCGGCCcaCGCACuaGGCCCGGca-CG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 51354 | 0.66 | 0.652612 |
Target: 5'- gGCCaGGacCGUGAgcaCCGGcCCGUGCu -3' miRNA: 3'- gCGGcCCacGCACUa--GGCCcGGCACG- -5' |
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29631 | 3' | -62.2 | NC_006151.1 | + | 49635 | 0.66 | 0.620425 |
Target: 5'- aGUgGGGguggGcCGUGGaggaggucgagcccUCCGGGCCGcGCc -3' miRNA: 3'- gCGgCCCa---C-GCACU--------------AGGCCCGGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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