miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 5' -56.8 NC_006151.1 + 31388 0.7 0.639212
Target:  5'- cCGGCACcaAGCCGGggGGcCGGgGCGAg -3'
miRNA:   3'- uGCUGUGc-UCGGCCuuCU-GCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 123614 0.7 0.639212
Target:  5'- gGCGAuauaucCGCGAGCUGGugcuGGCGGuUGCAGu -3'
miRNA:   3'- -UGCU------GUGCUCGGCCuu--CUGCC-ACGUU- -5'
29648 5' -56.8 NC_006151.1 + 130291 0.7 0.639212
Target:  5'- -gGGCGCGcGCCGGccGACGGcGCGGa -3'
miRNA:   3'- ugCUGUGCuCGGCCuuCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 9695 0.69 0.670017
Target:  5'- cCGGcCGCGGGugcCCGGGAGACGGgaGCGAa -3'
miRNA:   3'- uGCU-GUGCUC---GGCCUUCUGCCa-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 65170 0.69 0.670017
Target:  5'- uGCGGCgcGCGAGgCGGAAGcGCGGguccGCGAg -3'
miRNA:   3'- -UGCUG--UGCUCgGCCUUC-UGCCa---CGUU- -5'
29648 5' -56.8 NC_006151.1 + 73775 0.69 0.680234
Target:  5'- -gGGCACGuGCUGGgcGGCGGcGCGc -3'
miRNA:   3'- ugCUGUGCuCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 91744 0.69 0.680234
Target:  5'- cGCGGCgggcgaGCGGGCuCGGGcGGGCGGUGUg- -3'
miRNA:   3'- -UGCUG------UGCUCG-GCCU-UCUGCCACGuu -5'
29648 5' -56.8 NC_006151.1 + 14267 0.69 0.690412
Target:  5'- uCGGgGUGGGCCGGGAGugGGcgugGCAAc -3'
miRNA:   3'- uGCUgUGCUCGGCCUUCugCCa---CGUU- -5'
29648 5' -56.8 NC_006151.1 + 84754 0.69 0.690412
Target:  5'- gACGGCGCGcgccGCCGaGGAGGCGGacGCGg -3'
miRNA:   3'- -UGCUGUGCu---CGGC-CUUCUGCCa-CGUu -5'
29648 5' -56.8 NC_006151.1 + 30397 0.68 0.727571
Target:  5'- cGCGACGCGAGUCgacggGGAgaggaaggaggggaGGACGGaggGCGAg -3'
miRNA:   3'- -UGCUGUGCUCGG-----CCU--------------UCUGCCa--CGUU- -5'
29648 5' -56.8 NC_006151.1 + 68055 0.68 0.73054
Target:  5'- -gGGCACGGGCuCGGc-GACGG-GCAGg -3'
miRNA:   3'- ugCUGUGCUCG-GCCuuCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 59042 0.68 0.73054
Target:  5'- -gGuACAUGAGCCGGcuccAGGCGG-GCAGg -3'
miRNA:   3'- ugC-UGUGCUCGGCCu---UCUGCCaCGUU- -5'
29648 5' -56.8 NC_006151.1 + 20090 0.68 0.73054
Target:  5'- aACGuCAucuUGGGCUGGggGACGG-GCGc -3'
miRNA:   3'- -UGCuGU---GCUCGGCCuuCUGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 135093 0.68 0.740381
Target:  5'- gGCGGCG-GGGCCGGGcGGGCGGcgGUAGc -3'
miRNA:   3'- -UGCUGUgCUCGGCCU-UCUGCCa-CGUU- -5'
29648 5' -56.8 NC_006151.1 + 127484 0.68 0.749155
Target:  5'- aACGAgcCGCGGaccccgcGCCGGAAGcUGGUGCGc -3'
miRNA:   3'- -UGCU--GUGCU-------CGGCCUUCuGCCACGUu -5'
29648 5' -56.8 NC_006151.1 + 96587 0.68 0.750125
Target:  5'- cGCGGCGCGAggcGCCGGgcG-CGG-GCGc -3'
miRNA:   3'- -UGCUGUGCU---CGGCCuuCuGCCaCGUu -5'
29648 5' -56.8 NC_006151.1 + 27307 0.68 0.759765
Target:  5'- gGCGugGggguCGAGgCGGggGACGGgggGCu- -3'
miRNA:   3'- -UGCugU----GCUCgGCCuuCUGCCa--CGuu -5'
29648 5' -56.8 NC_006151.1 + 42682 0.68 0.769291
Target:  5'- uGCG-UGCGAGCCGGA-GACGGaGaCAAu -3'
miRNA:   3'- -UGCuGUGCUCGGCCUuCUGCCaC-GUU- -5'
29648 5' -56.8 NC_006151.1 + 119699 0.68 0.769291
Target:  5'- aACGACAgCGAGCCcccGAAGGCGaucaUGCAGg -3'
miRNA:   3'- -UGCUGU-GCUCGGc--CUUCUGCc---ACGUU- -5'
29648 5' -56.8 NC_006151.1 + 96927 0.68 0.769291
Target:  5'- cCGGgACGGGCCGGGAucGCGG-GCGGg -3'
miRNA:   3'- uGCUgUGCUCGGCCUUc-UGCCaCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.