Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 27122 | 0.71 | 0.389966 |
Target: 5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3' miRNA: 3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 26407 | 0.66 | 0.710166 |
Target: 5'- gCCUGGAagaaacaCUGUCGGCGGC-UCACCUg -3' miRNA: 3'- -GGACCUac-----GGCAGUUGUUGcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 26339 | 0.68 | 0.575835 |
Target: 5'- gCUGGAUGUCgGUCAGCGuuuCCGgCCg -3' miRNA: 3'- gGACCUACGG-CAGUUGUugcGGUgGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 25738 | 0.7 | 0.437862 |
Target: 5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3' miRNA: 3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 24042 | 0.7 | 0.457944 |
Target: 5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3' miRNA: 3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 23777 | 0.78 | 0.155696 |
Target: 5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3' miRNA: 3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 22011 | 0.72 | 0.345629 |
Target: 5'- gCUGG--GCCGUC-GCAcCGCCACCa -3' miRNA: 3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21744 | 0.71 | 0.399269 |
Target: 5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3' miRNA: 3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21666 | 0.66 | 0.710166 |
Target: 5'- cCCUGGucgGCCG-CAaguccaagccgaACGaaguagaguucaGCGCCACCg -3' miRNA: 3'- -GGACCua-CGGCaGU------------UGU------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21399 | 0.73 | 0.326483 |
Target: 5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3' miRNA: 3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21295 | 0.73 | 0.320815 |
Target: 5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3' miRNA: 3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21283 | 0.69 | 0.495279 |
Target: 5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3' miRNA: 3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21261 | 0.71 | 0.389966 |
Target: 5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3' miRNA: 3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 20861 | 0.68 | 0.575835 |
Target: 5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3' miRNA: 3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 19072 | 0.67 | 0.654459 |
Target: 5'- cCCUGGcgGCCGggAAau-CGCCAguUCCg -3' miRNA: 3'- -GGACCuaCGGCagUUguuGCGGU--GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18477 | 0.69 | 0.499514 |
Target: 5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3' miRNA: 3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18062 | 0.66 | 0.665689 |
Target: 5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3' miRNA: 3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 17851 | 0.66 | 0.676887 |
Target: 5'- --aGGAccgGUCGUUAGCcGCGCCACg- -3' miRNA: 3'- ggaCCUa--CGGCAGUUGuUGCGGUGgg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 16848 | 0.67 | 0.616179 |
Target: 5'- uCCUGGAcaaguucgguaUGCCcacggcgGUCGGCcgcuaugacgacaaGAcCGCCACCCc -3' miRNA: 3'- -GGACCU-----------ACGG-------CAGUUG--------------UU-GCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 16494 | 0.67 | 0.651085 |
Target: 5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3' miRNA: 3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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