miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 25040 0.65 0.442666
Target:  5'- gGCgUCGGCGGCguucaagGUGUCGUacAGCACacugCCCg -3'
miRNA:   3'- gCG-AGCCGUUG-------UACGGCG--UCGUG----GGG- -5'
30424 3' -58.8 NC_006548.1 + 37517 0.65 0.442666
Target:  5'- aGCcgUGGCGGCAUGUacucccaaauuggCGUacuGGCACCCg -3'
miRNA:   3'- gCGa-GCCGUUGUACG-------------GCG---UCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 32478 0.66 0.433894
Target:  5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3'
miRNA:   3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 7206 0.66 0.433894
Target:  5'- uGC-CaGCGACAggcccagcucUGCCGCGGCugCUUu -3'
miRNA:   3'- gCGaGcCGUUGU----------ACGGCGUCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 9642 0.66 0.433894
Target:  5'- gCGCUCGau-GCAcUGaUCGCGuGCGCCCCu -3'
miRNA:   3'- -GCGAGCcguUGU-AC-GGCGU-CGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36253 0.66 0.424267
Target:  5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3'
miRNA:   3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 1477 0.66 0.424267
Target:  5'- uCGC-CGGCAGuggaGUgGUAGCGCUCCa -3'
miRNA:   3'- -GCGaGCCGUUgua-CGgCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 19198 0.66 0.414769
Target:  5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3'
miRNA:   3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 25717 0.66 0.414769
Target:  5'- uGCUggagCGGCAACuccaguaccugGUGCCGaacaGGCAaCCCa -3'
miRNA:   3'- gCGA----GCCGUUG-----------UACGGCg---UCGUgGGG- -5'
30424 3' -58.8 NC_006548.1 + 32854 0.66 0.412885
Target:  5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3'
miRNA:   3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 3307 0.66 0.405402
Target:  5'- gGCUCGGguCAugA-GCUGCAGaGCCCg -3'
miRNA:   3'- gCGAGCC--GUugUaCGGCGUCgUGGGg -5'
30424 3' -58.8 NC_006548.1 + 11878 0.66 0.404473
Target:  5'- uGCUCGGcCAACcuggaggucguagGUGCCugGCuGCGCCgCu -3'
miRNA:   3'- gCGAGCC-GUUG-------------UACGG--CGuCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 21997 0.66 0.39617
Target:  5'- cCGaacaUCGGCGuGCuggGCCGUcGCACCgCCa -3'
miRNA:   3'- -GCg---AGCCGU-UGua-CGGCGuCGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 27020 0.67 0.390696
Target:  5'- uGCUCGGCcu--UGUCGCcuacguccuggacagAGCcCCCCa -3'
miRNA:   3'- gCGAGCCGuuguACGGCG---------------UCGuGGGG- -5'
30424 3' -58.8 NC_006548.1 + 29738 0.67 0.387074
Target:  5'- cCGCcacuacCGGCAGCcgcaccUGCCGCaccGGCACCgCu -3'
miRNA:   3'- -GCGa-----GCCGUUGu-----ACGGCG---UCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 17522 0.67 0.387074
Target:  5'- uCGCuUCGGC--CA-GCUGCGGCGCCa- -3'
miRNA:   3'- -GCG-AGCCGuuGUaCGGCGUCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 27286 0.67 0.387074
Target:  5'- cCGcCUCGGCAGCGcGuuGCucGGuCGCCgCCu -3'
miRNA:   3'- -GC-GAGCCGUUGUaCggCG--UC-GUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 20226 0.67 0.378117
Target:  5'- -cCUCGGUGcCGUGCCGCcggccaucaaaGGCAUUCCc -3'
miRNA:   3'- gcGAGCCGUuGUACGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36697 0.67 0.378117
Target:  5'- gCGC-CGGCcuCAUGCgGCgcuGGCACCg- -3'
miRNA:   3'- -GCGaGCCGuuGUACGgCG---UCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 17451 0.67 0.3693
Target:  5'- aGCagCGGCGAUGgcGCCGCAGCugGCCg- -3'
miRNA:   3'- gCGa-GCCGUUGUa-CGGCGUCG--UGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.