miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30428 5' -48.7 NC_006548.1 + 6496 0.66 0.931118
Target:  5'- cAGGGAGCAgCagagguucuUCGACAucGCCGAGa -3'
miRNA:   3'- -UCCUUCGUgGguu------AGUUGU--UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 8091 0.66 0.931118
Target:  5'- cGGaAAGCGCCUGAUCGu--GCUgaaaGAGCa -3'
miRNA:   3'- uCC-UUCGUGGGUUAGUuguUGG----UUCG- -5'
30428 5' -48.7 NC_006548.1 + 17624 0.66 0.930518
Target:  5'- gGGGAgcuagaucgagcaGGCGCUCGcgCAGaucuuCCAAGCu -3'
miRNA:   3'- -UCCU-------------UCGUGGGUuaGUUguu--GGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 3839 0.66 0.924973
Target:  5'- cAGGAgcGGCGCgC--UCAGCAAUCA-GCa -3'
miRNA:   3'- -UCCU--UCGUGgGuuAGUUGUUGGUuCG- -5'
30428 5' -48.7 NC_006548.1 + 33113 0.66 0.924973
Target:  5'- cGGAGGUcauGCCC--UCGACAacauACCGGGg -3'
miRNA:   3'- uCCUUCG---UGGGuuAGUUGU----UGGUUCg -5'
30428 5' -48.7 NC_006548.1 + 4506 0.66 0.92434
Target:  5'- uGGugcucAGGCGCUCGAUCAGCGccuggauGCCGcuuGCg -3'
miRNA:   3'- uCC-----UUCGUGGGUUAGUUGU-------UGGUu--CG- -5'
30428 5' -48.7 NC_006548.1 + 1982 0.66 0.918502
Target:  5'- cGGcuGCACCagggGAUCGGgcACCAGGCc -3'
miRNA:   3'- uCCuuCGUGGg---UUAGUUguUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 1051 0.66 0.918502
Target:  5'- uGGAA-CACCUccaugccauGUCGACGACCcAGCc -3'
miRNA:   3'- uCCUUcGUGGGu--------UAGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 14362 0.66 0.918502
Target:  5'- cGGGAAcuGCGCCUgcagguccgcGAUCAGCucguCCAGGg -3'
miRNA:   3'- -UCCUU--CGUGGG----------UUAGUUGuu--GGUUCg -5'
30428 5' -48.7 NC_006548.1 + 32960 0.66 0.918502
Target:  5'- uGGc-GCGCCCGGUgCAGCGGCgCuGGCc -3'
miRNA:   3'- uCCuuCGUGGGUUA-GUUGUUG-GuUCG- -5'
30428 5' -48.7 NC_006548.1 + 33037 0.66 0.917837
Target:  5'- cGGGAGcCGgCCGGcCAGCGccgcugcACCGGGCg -3'
miRNA:   3'- uCCUUC-GUgGGUUaGUUGU-------UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 33838 0.66 0.916497
Target:  5'- cGGAAGUcguacaagcuaaucGCCUGgccAUCGGCGACCGAccGCu -3'
miRNA:   3'- uCCUUCG--------------UGGGU---UAGUUGUUGGUU--CG- -5'
30428 5' -48.7 NC_006548.1 + 24908 0.66 0.911707
Target:  5'- ------gACCCGGUCAGCGAUCuGGCg -3'
miRNA:   3'- uccuucgUGGGUUAGUUGUUGGuUCG- -5'
30428 5' -48.7 NC_006548.1 + 25303 0.66 0.90459
Target:  5'- cGGcAAGC-CUCGAUCAuuGACCAccauGGCg -3'
miRNA:   3'- uCC-UUCGuGGGUUAGUugUUGGU----UCG- -5'
30428 5' -48.7 NC_006548.1 + 4644 0.66 0.90459
Target:  5'- uGGAaaAGCACCUggAGUUccgcuuCGGCCGGGCu -3'
miRNA:   3'- uCCU--UCGUGGG--UUAGuu----GUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 14717 0.66 0.90459
Target:  5'- gGGcGGAGUGaCCGA--GGCGACCAAGCa -3'
miRNA:   3'- -UC-CUUCGUgGGUUagUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 19997 0.66 0.90459
Target:  5'- cAGGAuGGC-CUCGGUgAACuccACCGGGCg -3'
miRNA:   3'- -UCCU-UCGuGGGUUAgUUGu--UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 17145 0.67 0.897153
Target:  5'- cGGggGUGCCCuggguacUCGcCAccugGCCGAGCc -3'
miRNA:   3'- uCCuuCGUGGGuu-----AGUuGU----UGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 27206 0.67 0.897153
Target:  5'- ----cGCGUCCAGcaggCGGCGACCGAGCa -3'
miRNA:   3'- uccuuCGUGGGUUa---GUUGUUGGUUCG- -5'
30428 5' -48.7 NC_006548.1 + 31022 0.67 0.889403
Target:  5'- -cGAAGuCGCCCAGguuUCGGCGACCcucGGUu -3'
miRNA:   3'- ucCUUC-GUGGGUU---AGUUGUUGGu--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.