Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30428 | 5' | -48.7 | NC_006548.1 | + | 6496 | 0.66 | 0.931118 |
Target: 5'- cAGGGAGCAgCagagguucuUCGACAucGCCGAGa -3' miRNA: 3'- -UCCUUCGUgGguu------AGUUGU--UGGUUCg -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 8091 | 0.66 | 0.931118 |
Target: 5'- cGGaAAGCGCCUGAUCGu--GCUgaaaGAGCa -3' miRNA: 3'- uCC-UUCGUGGGUUAGUuguUGG----UUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 17624 | 0.66 | 0.930518 |
Target: 5'- gGGGAgcuagaucgagcaGGCGCUCGcgCAGaucuuCCAAGCu -3' miRNA: 3'- -UCCU-------------UCGUGGGUuaGUUguu--GGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 3839 | 0.66 | 0.924973 |
Target: 5'- cAGGAgcGGCGCgC--UCAGCAAUCA-GCa -3' miRNA: 3'- -UCCU--UCGUGgGuuAGUUGUUGGUuCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 33113 | 0.66 | 0.924973 |
Target: 5'- cGGAGGUcauGCCC--UCGACAacauACCGGGg -3' miRNA: 3'- uCCUUCG---UGGGuuAGUUGU----UGGUUCg -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 4506 | 0.66 | 0.92434 |
Target: 5'- uGGugcucAGGCGCUCGAUCAGCGccuggauGCCGcuuGCg -3' miRNA: 3'- uCC-----UUCGUGGGUUAGUUGU-------UGGUu--CG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 1982 | 0.66 | 0.918502 |
Target: 5'- cGGcuGCACCagggGAUCGGgcACCAGGCc -3' miRNA: 3'- uCCuuCGUGGg---UUAGUUguUGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 1051 | 0.66 | 0.918502 |
Target: 5'- uGGAA-CACCUccaugccauGUCGACGACCcAGCc -3' miRNA: 3'- uCCUUcGUGGGu--------UAGUUGUUGGuUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 14362 | 0.66 | 0.918502 |
Target: 5'- cGGGAAcuGCGCCUgcagguccgcGAUCAGCucguCCAGGg -3' miRNA: 3'- -UCCUU--CGUGGG----------UUAGUUGuu--GGUUCg -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 32960 | 0.66 | 0.918502 |
Target: 5'- uGGc-GCGCCCGGUgCAGCGGCgCuGGCc -3' miRNA: 3'- uCCuuCGUGGGUUA-GUUGUUG-GuUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 33037 | 0.66 | 0.917837 |
Target: 5'- cGGGAGcCGgCCGGcCAGCGccgcugcACCGGGCg -3' miRNA: 3'- uCCUUC-GUgGGUUaGUUGU-------UGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 33838 | 0.66 | 0.916497 |
Target: 5'- cGGAAGUcguacaagcuaaucGCCUGgccAUCGGCGACCGAccGCu -3' miRNA: 3'- uCCUUCG--------------UGGGU---UAGUUGUUGGUU--CG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 24908 | 0.66 | 0.911707 |
Target: 5'- ------gACCCGGUCAGCGAUCuGGCg -3' miRNA: 3'- uccuucgUGGGUUAGUUGUUGGuUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 25303 | 0.66 | 0.90459 |
Target: 5'- cGGcAAGC-CUCGAUCAuuGACCAccauGGCg -3' miRNA: 3'- uCC-UUCGuGGGUUAGUugUUGGU----UCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 4644 | 0.66 | 0.90459 |
Target: 5'- uGGAaaAGCACCUggAGUUccgcuuCGGCCGGGCu -3' miRNA: 3'- uCCU--UCGUGGG--UUAGuu----GUUGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 14717 | 0.66 | 0.90459 |
Target: 5'- gGGcGGAGUGaCCGA--GGCGACCAAGCa -3' miRNA: 3'- -UC-CUUCGUgGGUUagUUGUUGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 19997 | 0.66 | 0.90459 |
Target: 5'- cAGGAuGGC-CUCGGUgAACuccACCGGGCg -3' miRNA: 3'- -UCCU-UCGuGGGUUAgUUGu--UGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 17145 | 0.67 | 0.897153 |
Target: 5'- cGGggGUGCCCuggguacUCGcCAccugGCCGAGCc -3' miRNA: 3'- uCCuuCGUGGGuu-----AGUuGU----UGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 27206 | 0.67 | 0.897153 |
Target: 5'- ----cGCGUCCAGcaggCGGCGACCGAGCa -3' miRNA: 3'- uccuuCGUGGGUUa---GUUGUUGGUUCG- -5' |
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30428 | 5' | -48.7 | NC_006548.1 | + | 31022 | 0.67 | 0.889403 |
Target: 5'- -cGAAGuCGCCCAGguuUCGGCGACCcucGGUu -3' miRNA: 3'- ucCUUC-GUGGGUU---AGUUGUUGGu--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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