miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 37070 0.68 0.154794
Target:  5'- uAGCgcauggGCUGCUGCCgGUGCuGcGCAUCg -3'
miRNA:   3'- -UCGaa----CGGCGGCGGgCGCGuC-CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36700 0.66 0.223804
Target:  5'- ----aGCgCGCCgGCCUcaugcgGCGCuGGCACCg -3'
miRNA:   3'- ucgaaCG-GCGG-CGGG------CGCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 36340 0.67 0.176901
Target:  5'- cGCUcagUGCCGCCGCgagaucaCG-GUAcGGCGCCu -3'
miRNA:   3'- uCGA---ACGGCGGCGg------GCgCGU-CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 35941 0.77 0.032125
Target:  5'- ----cGCCGCCGgCCGCGCGGaucGCGCCg -3'
miRNA:   3'- ucgaaCGGCGGCgGGCGCGUC---CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 35729 0.66 0.222083
Target:  5'- cGCga--CGCUGCCCGUauucgaugaggacaGCGGGCugCu -3'
miRNA:   3'- uCGaacgGCGGCGGGCG--------------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 33571 0.67 0.201771
Target:  5'- cGCUUGgCGaUCGaCagCGCGCuGGGCACCg -3'
miRNA:   3'- uCGAACgGC-GGC-Gg-GCGCG-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 33401 0.67 0.196565
Target:  5'- cGCUUuCUGCCgGCCaCGCagggcguacaGCAGGCugCg -3'
miRNA:   3'- uCGAAcGGCGG-CGG-GCG----------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 33205 0.67 0.196565
Target:  5'- ----gGCCGCUGCCCGaGCAccGGCcaGCCc -3'
miRNA:   3'- ucgaaCGGCGGCGGGCgCGU--CCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 33141 0.68 0.154794
Target:  5'- gGGCUgGCCGgUGCUCGgGCAgcGGC-CCg -3'
miRNA:   3'- -UCGAaCGGCgGCGGGCgCGU--CCGuGG- -5'
30431 3' -63.7 NC_006548.1 + 33026 0.67 0.201771
Target:  5'- cGGCcagcGCCGCUGCaCCGgGC--GCGCCa -3'
miRNA:   3'- -UCGaa--CGGCGGCG-GGCgCGucCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 32876 0.66 0.223804
Target:  5'- cGUUUGUgCGCCGgCCGCGguGaCGCUu -3'
miRNA:   3'- uCGAACG-GCGGCgGGCGCguCcGUGG- -5'
30431 3' -63.7 NC_006548.1 + 32414 0.66 0.235569
Target:  5'- cAGCcgucGCCGCCGUugCCGUucGCGGcGCugCa -3'
miRNA:   3'- -UCGaa--CGGCGGCG--GGCG--CGUC-CGugG- -5'
30431 3' -63.7 NC_006548.1 + 30402 0.7 0.10859
Target:  5'- uGGCgucggUGCCGCCcagGCCaggggCGCGCAGaGuCACCu -3'
miRNA:   3'- -UCGa----ACGGCGG---CGG-----GCGCGUC-C-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 30323 0.66 0.235569
Target:  5'- aGGUgacucUGCgCGCCccugGCCUGgGC-GGCACCg -3'
miRNA:   3'- -UCGa----ACG-GCGG----CGGGCgCGuCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29977 0.68 0.172266
Target:  5'- uGGCUaUGCCGcCCGUCgCGUGCcgcacaGCGCCg -3'
miRNA:   3'- -UCGA-ACGGC-GGCGG-GCGCGuc----CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29728 0.67 0.196565
Target:  5'- cGGCa-GCCGCa-CCUGcCGCAccGGCACCg -3'
miRNA:   3'- -UCGaaCGGCGgcGGGC-GCGU--CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29645 0.69 0.131587
Target:  5'- uGCUggUGCCGCUGCCagcggugccggUGCGgCAGGUGCg -3'
miRNA:   3'- uCGA--ACGGCGGCGG-----------GCGC-GUCCGUGg -5'
30431 3' -63.7 NC_006548.1 + 28129 0.66 0.212542
Target:  5'- aGGCc-GCCaGCCGCCUGCuGUgAGGCuggACCa -3'
miRNA:   3'- -UCGaaCGG-CGGCGGGCG-CG-UCCG---UGG- -5'
30431 3' -63.7 NC_006548.1 + 27931 0.67 0.201771
Target:  5'- cGGCgcguucucGCUGCCGCCaagGCccuGGGCACCa -3'
miRNA:   3'- -UCGaa------CGGCGGCGGg--CGcg-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 27269 0.68 0.167739
Target:  5'- uGCUcgGUCGCCGCCUGCuggacGCGaGCACg -3'
miRNA:   3'- uCGAa-CGGCGGCGGGCG-----CGUcCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.