miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30447 5' -58.2 NC_006548.1 + 30398 0.66 0.447965
Target:  5'- gUCGGugCC---GCCCAgGCCAgGGGCg -3'
miRNA:   3'- aGGUCugGGaacCGGGU-CGGUaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 15585 0.66 0.438062
Target:  5'- -gCAGACCgCUaacUGGCagCAGCCcgaGGGCg -3'
miRNA:   3'- agGUCUGG-GA---ACCGg-GUCGGua-UCCG- -5'
30447 5' -58.2 NC_006548.1 + 27887 0.66 0.427315
Target:  5'- gUCCAGACCCagGagcuaguucugcaGCUCGGCCAgcgcguucccGGCg -3'
miRNA:   3'- -AGGUCUGGGaaC-------------CGGGUCGGUau--------CCG- -5'
30447 5' -58.2 NC_006548.1 + 30148 0.66 0.418639
Target:  5'- gCCAGAaguuuUCCU--GCCCAGCCuuacuccAGGCg -3'
miRNA:   3'- aGGUCU-----GGGAacCGGGUCGGua-----UCCG- -5'
30447 5' -58.2 NC_006548.1 + 11948 0.66 0.417682
Target:  5'- gCCAGGCaCCUacgaccuccagguUGGCCgAGCauuCAUgcGGGCg -3'
miRNA:   3'- aGGUCUG-GGA-------------ACCGGgUCG---GUA--UCCG- -5'
30447 5' -58.2 NC_006548.1 + 24012 0.66 0.409126
Target:  5'- gCCAGGCCgggcgGuGUCCAGCCGaucaGGGCc -3'
miRNA:   3'- aGGUCUGGgaa--C-CGGGUCGGUa---UCCG- -5'
30447 5' -58.2 NC_006548.1 + 3140 0.67 0.399749
Target:  5'- aCCAGGcgcCCCUUGGCguCCAuGCgGUAcccGGCg -3'
miRNA:   3'- aGGUCU---GGGAACCG--GGU-CGgUAU---CCG- -5'
30447 5' -58.2 NC_006548.1 + 14231 0.67 0.399749
Target:  5'- aCCGGACCa--GGUCCGgGCCuacaucgagGGGCg -3'
miRNA:   3'- aGGUCUGGgaaCCGGGU-CGGua-------UCCG- -5'
30447 5' -58.2 NC_006548.1 + 869 0.67 0.399749
Target:  5'- gCCAGuuGCCCgccgaGGUCCAgGUCAUcgAGGCg -3'
miRNA:   3'- aGGUC--UGGGaa---CCGGGU-CGGUA--UCCG- -5'
30447 5' -58.2 NC_006548.1 + 6598 0.67 0.398819
Target:  5'- aUCCugaugauGGACCC-UGGUUCGGCCAacaucucGGCg -3'
miRNA:   3'- -AGG-------UCUGGGaACCGGGUCGGUau-----CCG- -5'
30447 5' -58.2 NC_006548.1 + 13073 0.67 0.381412
Target:  5'- cCCAGGCCCUucaggacgcccUGGUCCAGUacaagcagcAGGUc -3'
miRNA:   3'- aGGUCUGGGA-----------ACCGGGUCGgua------UCCG- -5'
30447 5' -58.2 NC_006548.1 + 25434 0.67 0.363645
Target:  5'- aUCAGAUCCUUgccaGGCCguGCgCGcAGGCc -3'
miRNA:   3'- aGGUCUGGGAA----CCGGguCG-GUaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 17078 0.67 0.354979
Target:  5'- gCCAGguggcgaguACCCagGGCacccCCGGCCGUcuGGGCa -3'
miRNA:   3'- aGGUC---------UGGGaaCCG----GGUCGGUA--UCCG- -5'
30447 5' -58.2 NC_006548.1 + 613 0.67 0.354979
Target:  5'- cCCAGGCCC-UGGCagAGCCGauccacuucGGCg -3'
miRNA:   3'- aGGUCUGGGaACCGggUCGGUau-------CCG- -5'
30447 5' -58.2 NC_006548.1 + 13938 0.67 0.354979
Target:  5'- uUCUAcuGACCCUgaacaauGCUCGGCCgGUGGGCc -3'
miRNA:   3'- -AGGU--CUGGGAac-----CGGGUCGG-UAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 2395 0.67 0.354979
Target:  5'- gCCGGcuggaACCC-UGGCuucgCCAGCCAUGcuGGCc -3'
miRNA:   3'- aGGUC-----UGGGaACCG----GGUCGGUAU--CCG- -5'
30447 5' -58.2 NC_006548.1 + 30237 0.68 0.34646
Target:  5'- cCCAGACC--UGGUCgCGGCU--GGGCa -3'
miRNA:   3'- aGGUCUGGgaACCGG-GUCGGuaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 20034 0.68 0.321788
Target:  5'- gCCGG-CCUaUGGCUgGGCCAaGGGUc -3'
miRNA:   3'- aGGUCuGGGaACCGGgUCGGUaUCCG- -5'
30447 5' -58.2 NC_006548.1 + 28761 0.68 0.313861
Target:  5'- -gCAG-CCC--GGCCCuuGCCGUAGGUc -3'
miRNA:   3'- agGUCuGGGaaCCGGGu-CGGUAUCCG- -5'
30447 5' -58.2 NC_006548.1 + 17609 0.68 0.306083
Target:  5'- cCCAGGCCa-UGGCCgaggGGCUggAGGCa -3'
miRNA:   3'- aGGUCUGGgaACCGGg---UCGGuaUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.