miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30450 3' -63.4 NC_006548.1 + 27135 0.66 0.256756
Target:  5'- gGCUGCCGcaGCAuCCUGGGCcgauuguuguugcaGCgAGGCc -3'
miRNA:   3'- -CGAUGGC--CGUcGGACCCGc-------------CGgUCCG- -5'
30450 3' -63.4 NC_006548.1 + 23169 0.66 0.254185
Target:  5'- aGCU-CCGGCAGCgUGauguacaCGGCCAcuacGGCc -3'
miRNA:   3'- -CGAuGGCCGUCGgACcc-----GCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 22545 0.66 0.253545
Target:  5'- aGCcGCCGGCggaggagAGCCUGaucGaCGGCCAacuGGCc -3'
miRNA:   3'- -CGaUGGCCG-------UCGGACc--C-GCCGGU---CCG- -5'
30450 3' -63.4 NC_006548.1 + 23409 0.66 0.247849
Target:  5'- cGCUACCuguuGCAccaggaccGCUUGG--GGCCAGGCg -3'
miRNA:   3'- -CGAUGGc---CGU--------CGGACCcgCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 9852 0.66 0.247849
Target:  5'- uGCUucACCuGGuCGGCCgugaGGGCuuugguugcagcGGCCAuGGCg -3'
miRNA:   3'- -CGA--UGG-CC-GUCGGa---CCCG------------CCGGU-CCG- -5'
30450 3' -63.4 NC_006548.1 + 15186 0.66 0.247222
Target:  5'- gGUUGCUGGaCAuaCUGuggauacGGCGGCCAuuGGCg -3'
miRNA:   3'- -CGAUGGCC-GUcgGAC-------CCGCCGGU--CCG- -5'
30450 3' -63.4 NC_006548.1 + 21721 0.66 0.24411
Target:  5'- --aACCGGCagcaccgaagaccacGGCCUGGaCGcGCCGGuGCc -3'
miRNA:   3'- cgaUGGCCG---------------UCGGACCcGC-CGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 36828 0.66 0.241644
Target:  5'- cGCcugGCCGGguGCUggUGuGUGGUguGGCg -3'
miRNA:   3'- -CGa--UGGCCguCGG--ACcCGCCGguCCG- -5'
30450 3' -63.4 NC_006548.1 + 36175 0.66 0.241644
Target:  5'- aCUGCCGGCAGCC-GGGaCGuCC--GCa -3'
miRNA:   3'- cGAUGGCCGUCGGaCCC-GCcGGucCG- -5'
30450 3' -63.4 NC_006548.1 + 19301 0.66 0.241644
Target:  5'- --gGCCGGCGaCaaGGGCuGCCAaGGCg -3'
miRNA:   3'- cgaUGGCCGUcGgaCCCGcCGGU-CCG- -5'
30450 3' -63.4 NC_006548.1 + 7352 0.66 0.235569
Target:  5'- cGCgaACUgGGCAuCCaGGGCGGCCAuaucGGCc -3'
miRNA:   3'- -CGa-UGG-CCGUcGGaCCCGCCGGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 1188 0.66 0.235569
Target:  5'- cGUUGCUGGCcGCgcaGaCGGCCAGGCu -3'
miRNA:   3'- -CGAUGGCCGuCGgacCcGCCGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 28890 0.66 0.235569
Target:  5'- gGCcACCGGCcaaaCCgucGaGGCGGCCGGcGCc -3'
miRNA:   3'- -CGaUGGCCGuc--GGa--C-CCGCCGGUC-CG- -5'
30450 3' -63.4 NC_006548.1 + 6304 0.66 0.234969
Target:  5'- -aUGCCGGCuguguacGGCCgucgcauugaagUGGGCGcGCCacuucuucgcuuGGGCg -3'
miRNA:   3'- cgAUGGCCG-------UCGG------------ACCCGC-CGG------------UCCG- -5'
30450 3' -63.4 NC_006548.1 + 36225 0.66 0.229035
Target:  5'- gGCUGCCGGCAGUCcGaacacgucuuccaGcGCGGUgAuGGCg -3'
miRNA:   3'- -CGAUGGCCGUCGGaC-------------C-CGCCGgU-CCG- -5'
30450 3' -63.4 NC_006548.1 + 13391 0.66 0.227864
Target:  5'- aGC-GCCGGCGGaaucggcgcgcgcuCCUGcGGCGGgCAaaccGGCg -3'
miRNA:   3'- -CGaUGGCCGUC--------------GGAC-CCGCCgGU----CCG- -5'
30450 3' -63.4 NC_006548.1 + 6521 0.66 0.223804
Target:  5'- --cAUCGuGCAcgcGCCaGGGCGGCgCGGGUu -3'
miRNA:   3'- cgaUGGC-CGU---CGGaCCCGCCG-GUCCG- -5'
30450 3' -63.4 NC_006548.1 + 7468 0.66 0.223804
Target:  5'- cCUGCCuGCAgaGCUUGGucGCGaCCAGGCa -3'
miRNA:   3'- cGAUGGcCGU--CGGACC--CGCcGGUCCG- -5'
30450 3' -63.4 NC_006548.1 + 14227 0.66 0.223804
Target:  5'- gGCUACCGGaccagguccgGGCCUacaucgagGGGCG-CCuGGCc -3'
miRNA:   3'- -CGAUGGCCg---------UCGGA--------CCCGCcGGuCCG- -5'
30450 3' -63.4 NC_006548.1 + 8690 0.67 0.218111
Target:  5'- gGCUGCCGGCauggaaAGCCaGGaGCGccCCAacGGCg -3'
miRNA:   3'- -CGAUGGCCG------UCGGaCC-CGCc-GGU--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.