miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30468 5' -61.2 NC_006548.1 + 26999 0.66 0.327977
Target:  5'- aGCagCGUCGGCGAGuCCGCcgaucaGCAGacggccCGCAu -3'
miRNA:   3'- aCG--GUAGCCGCUCuGGCG------CGUC------GCGU- -5'
30468 5' -61.2 NC_006548.1 + 19003 0.66 0.327977
Target:  5'- aGCCGgaacUGGCGAuuucccGGCCGC-CAGgGCAc -3'
miRNA:   3'- aCGGUa---GCCGCU------CUGGCGcGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 27222 0.66 0.327976
Target:  5'- gGCguUCauGGCGguGGACUGCGCuugAGCGCu -3'
miRNA:   3'- aCGguAG--CCGC--UCUGGCGCG---UCGCGu -5'
30468 5' -61.2 NC_006548.1 + 21402 0.66 0.3201
Target:  5'- cGCCccUgGGCGucGGCCGU-CAGCGCAu -3'
miRNA:   3'- aCGGu-AgCCGCu-CUGGCGcGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 13299 0.66 0.311602
Target:  5'- cGCCcUCGGCGccGGuuugcccGCCGCaGgAGCGCGc -3'
miRNA:   3'- aCGGuAGCCGC--UC-------UGGCG-CgUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 6916 0.66 0.297328
Target:  5'- aUGCa---GGCGGuaGCUGUGCAGCGCGc -3'
miRNA:   3'- -ACGguagCCGCUc-UGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 12933 0.66 0.297328
Target:  5'- gGCUcgCGcugagcGCGGuGCUGUGCGGCGCAg -3'
miRNA:   3'- aCGGuaGC------CGCUcUGGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 8522 0.66 0.297328
Target:  5'- cGCgAUCagaacGCGcAGGaCGCGCAGCGCGg -3'
miRNA:   3'- aCGgUAGc----CGC-UCUgGCGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 21994 0.66 0.290021
Target:  5'- cGCCcgaacAUCGGCGugcuGGGCCGuCGCAcCGCc -3'
miRNA:   3'- aCGG-----UAGCCGC----UCUGGC-GCGUcGCGu -5'
30468 5' -61.2 NC_006548.1 + 20115 0.66 0.285705
Target:  5'- cGCCGaggCGGCGAaccGCaagauguacaagaaGCGCAGCGCu -3'
miRNA:   3'- aCGGUa--GCCGCUc--UGg-------------CGCGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 16102 0.67 0.275832
Target:  5'- cGCCcagaacucGUCGGCauGGCCGUcaGCAGUGCGc -3'
miRNA:   3'- aCGG--------UAGCCGcuCUGGCG--CGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 22015 0.67 0.275832
Target:  5'- aGCgCAUCGGUGAucACCG-GCAGCGgGu -3'
miRNA:   3'- aCG-GUAGCCGCUc-UGGCgCGUCGCgU- -5'
30468 5' -61.2 NC_006548.1 + 12276 0.67 0.275832
Target:  5'- cGcCCGUCGGCGcacaGGGCCugGCGCAGUuuauGCc -3'
miRNA:   3'- aC-GGUAGCCGC----UCUGG--CGCGUCG----CGu -5'
30468 5' -61.2 NC_006548.1 + 29216 0.67 0.268948
Target:  5'- gGCCAaggcaacUGGCGAuccGGCCGCGaucgAGCGCGu -3'
miRNA:   3'- aCGGUa------GCCGCU---CUGGCGCg---UCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 36589 0.67 0.268948
Target:  5'- cGCCG-CGGCcGGcACCGCGguGCucGCGc -3'
miRNA:   3'- aCGGUaGCCGcUC-UGGCGCguCG--CGU- -5'
30468 5' -61.2 NC_006548.1 + 32438 0.67 0.268268
Target:  5'- aUGCCAUCGGCGuccucgcGAUCgaucugcgacaggGUGCGGgGCGu -3'
miRNA:   3'- -ACGGUAGCCGCu------CUGG-------------CGCGUCgCGU- -5'
30468 5' -61.2 NC_006548.1 + 32415 0.67 0.262204
Target:  5'- aGCCGUCGccgcCGuuGCCGUucGCGGCGCu -3'
miRNA:   3'- aCGGUAGCc---GCucUGGCG--CGUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 26480 0.67 0.262203
Target:  5'- aGCCGcaGGUGAG-CCGCGaCAGUGUu -3'
miRNA:   3'- aCGGUagCCGCUCuGGCGC-GUCGCGu -5'
30468 5' -61.2 NC_006548.1 + 9572 0.67 0.255597
Target:  5'- cGCCAggGGCGcacgcgaucAGugCaucgaGCGCGGCGCGc -3'
miRNA:   3'- aCGGUagCCGC---------UCugG-----CGCGUCGCGU- -5'
30468 5' -61.2 NC_006548.1 + 6945 0.67 0.254944
Target:  5'- aGCUAUUGGCGccGGAgccggucaccgaaCUGCGCAGCcuGCAu -3'
miRNA:   3'- aCGGUAGCCGC--UCU-------------GGCGCGUCG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.