miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30480 5' -60.6 NC_006548.1 + 31253 0.66 0.402045
Target:  5'- aGCCcgGUCGGUGACCcaGCCGa--GCGAc -3'
miRNA:   3'- cCGG--UAGCCGCUGGc-UGGCgagCGCU- -5'
30480 5' -60.6 NC_006548.1 + 25917 0.66 0.402045
Target:  5'- gGGCCAgcaggCGGUGACau-CCGCcacaUCGCa- -3'
miRNA:   3'- -CCGGUa----GCCGCUGgcuGGCG----AGCGcu -5'
30480 5' -60.6 NC_006548.1 + 11894 0.66 0.393115
Target:  5'- aGGUCGUaGGUgccuGGCUGcGCCGCUCGCuGAu -3'
miRNA:   3'- -CCGGUAgCCG----CUGGC-UGGCGAGCG-CU- -5'
30480 5' -60.6 NC_006548.1 + 18655 0.66 0.393115
Target:  5'- aGCCAU-GGCGACa-ACCGC-CGCa- -3'
miRNA:   3'- cCGGUAgCCGCUGgcUGGCGaGCGcu -5'
30480 5' -60.6 NC_006548.1 + 16866 0.66 0.393115
Target:  5'- uGCCcaCGGCGGUCGGCCGCUaUGaCGAc -3'
miRNA:   3'- cCGGuaGCCGCUGGCUGGCGA-GC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 20820 0.66 0.393115
Target:  5'- aGGCCuUCGGCGAacucggUGACCuCgUUGCGAu -3'
miRNA:   3'- -CCGGuAGCCGCUg-----GCUGGcG-AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 23398 0.66 0.384315
Target:  5'- gGGCCAUCGcucGCuACCuguugcaccagGACCGCUUGgGGc -3'
miRNA:   3'- -CCGGUAGC---CGcUGG-----------CUGGCGAGCgCU- -5'
30480 5' -60.6 NC_006548.1 + 17875 0.66 0.384315
Target:  5'- aGGCCAUCcGUGACggcaUGACC-CUgGCGGa -3'
miRNA:   3'- -CCGGUAGcCGCUG----GCUGGcGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 4509 0.66 0.375647
Target:  5'- uGCCAUCGGCaACaugauGAUCGCg-GCGAu -3'
miRNA:   3'- cCGGUAGCCGcUGg----CUGGCGagCGCU- -5'
30480 5' -60.6 NC_006548.1 + 21604 0.66 0.375647
Target:  5'- cGGCCGUugcgguaggcgaUGGCGAUCG-CCGUcaguUCGgGAu -3'
miRNA:   3'- -CCGGUA------------GCCGCUGGCuGGCG----AGCgCU- -5'
30480 5' -60.6 NC_006548.1 + 36425 0.66 0.375647
Target:  5'- cGGaCGUcCGGCGACUucuGcCCGgUCGCGAc -3'
miRNA:   3'- -CCgGUA-GCCGCUGG---CuGGCgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 28533 0.66 0.375647
Target:  5'- aGuCCugcUCGGCG-CCGGCCaGgUCGCGGc -3'
miRNA:   3'- cC-GGu--AGCCGCuGGCUGG-CgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 20883 0.66 0.375647
Target:  5'- cGGCCAggucacaaagcCGGCGGCCGAggUGCUgCGCa- -3'
miRNA:   3'- -CCGGUa----------GCCGCUGGCUg-GCGA-GCGcu -5'
30480 5' -60.6 NC_006548.1 + 20945 0.66 0.367112
Target:  5'- cGGCCGcCGGCuuuguGACCuGGCCGUcgcccUCgGCGAa -3'
miRNA:   3'- -CCGGUaGCCG-----CUGG-CUGGCG-----AG-CGCU- -5'
30480 5' -60.6 NC_006548.1 + 22146 0.66 0.358711
Target:  5'- aGGCCAUCGGC-ACCauGCC-CUCGUc- -3'
miRNA:   3'- -CCGGUAGCCGcUGGc-UGGcGAGCGcu -5'
30480 5' -60.6 NC_006548.1 + 17393 0.66 0.357046
Target:  5'- aGGCCA-CGGCG-CCGACgccuuccaccgaGUUCGcCGAg -3'
miRNA:   3'- -CCGGUaGCCGCuGGCUGg-----------CGAGC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 12588 0.66 0.353735
Target:  5'- aGGCCAgcuggUCGGCG-CCGgauGCCGaggccagcuuacggUCGCGAu -3'
miRNA:   3'- -CCGGU-----AGCCGCuGGC---UGGCg-------------AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 12892 0.67 0.342316
Target:  5'- aGCCAcacCGGacuuACCGcGCCGCUCGCGc -3'
miRNA:   3'- cCGGUa--GCCgc--UGGC-UGGCGAGCGCu -5'
30480 5' -60.6 NC_006548.1 + 12519 0.67 0.342315
Target:  5'- uGGCC-UCGGCauccggcGCCGACCaGCUgGCc- -3'
miRNA:   3'- -CCGGuAGCCGc------UGGCUGG-CGAgCGcu -5'
30480 5' -60.6 NC_006548.1 + 12640 0.67 0.326469
Target:  5'- cGGaaGUUGGCGGCCGAgCGCcCgGCGu -3'
miRNA:   3'- -CCggUAGCCGCUGGCUgGCGaG-CGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.