miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 37958 0.68 0.309083
Target:  5'- ---aGCUGGGuGCCGGCggugaGguAGGCCg -3'
miRNA:   3'- agugCGGUCCuCGGCCGa----CguUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 37779 0.66 0.422189
Target:  5'- -gACGCCGGucGCCGGCacUGUgauGAGCg -3'
miRNA:   3'- agUGCGGUCcuCGGCCG--ACGu--UUCGg -5'
30494 5' -58.3 NC_006548.1 + 37545 0.66 0.403225
Target:  5'- -gGCGCCGGcgguuGGGCUgaguGGaCUGUggGGCCa -3'
miRNA:   3'- agUGCGGUC-----CUCGG----CC-GACGuuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 36857 0.66 0.43187
Target:  5'- cCGCGCCuGGcGCUGGUUcauucGCAgcGAGUCg -3'
miRNA:   3'- aGUGCGGuCCuCGGCCGA-----CGU--UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 36807 0.67 0.384809
Target:  5'- -aGCGCCAGGcG-CGGCcuuaUGCGccuGGCCg -3'
miRNA:   3'- agUGCGGUCCuCgGCCG----ACGUu--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 36611 0.66 0.419311
Target:  5'- cUCGCGCgGGGAugcgucgauacgguGCCaGCgccGCAugAGGCCg -3'
miRNA:   3'- -AGUGCGgUCCU--------------CGGcCGa--CGU--UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 34076 0.7 0.226559
Target:  5'- aCugGCCGGccgacAGCCGGgUGCAGAucaaauGCCg -3'
miRNA:   3'- aGugCGGUCc----UCGGCCgACGUUU------CGG- -5'
30494 5' -58.3 NC_006548.1 + 33529 0.71 0.192772
Target:  5'- aUCGCGCC---GGCCGGgaGCAucAGCCc -3'
miRNA:   3'- -AGUGCGGuccUCGGCCgaCGUu-UCGG- -5'
30494 5' -58.3 NC_006548.1 + 33303 0.67 0.375813
Target:  5'- --cCGCgAGGAGCaugCGGCgcUGCGcAGCCu -3'
miRNA:   3'- aguGCGgUCCUCG---GCCG--ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 33118 0.66 0.435779
Target:  5'- gUCAUGCCcucgacaacauaccgGGGcuGGCCGGUgcucggGCAGcGGCCc -3'
miRNA:   3'- -AGUGCGG---------------UCC--UCGGCCGa-----CGUU-UCGG- -5'
30494 5' -58.3 NC_006548.1 + 32868 0.66 0.422189
Target:  5'- uUCGUGCUGGGGGCCuugcgcuGCUGCGcgguGAGUCa -3'
miRNA:   3'- -AGUGCGGUCCUCGGc------CGACGU----UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 32643 0.7 0.232656
Target:  5'- gCACGUCGGGAGUCGaGCaacgGCGAucGCUg -3'
miRNA:   3'- aGUGCGGUCCUCGGC-CGa---CGUUu-CGG- -5'
30494 5' -58.3 NC_006548.1 + 31995 0.67 0.375813
Target:  5'- aCGCGCCAGGuGUCGGUUcCGaucgugaucGAGUCc -3'
miRNA:   3'- aGUGCGGUCCuCGGCCGAcGU---------UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 30767 0.69 0.29239
Target:  5'- aUCcCGCCGGGcGCUGGCUcgguuucacugucGCAGgugggucAGCCa -3'
miRNA:   3'- -AGuGCGGUCCuCGGCCGA-------------CGUU-------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 30387 0.68 0.308309
Target:  5'- cCAgGCCAGGGGCgcgcagagucaccUGGCguacgGCuauAGCCg -3'
miRNA:   3'- aGUgCGGUCCUCG-------------GCCGa----CGuu-UCGG- -5'
30494 5' -58.3 NC_006548.1 + 29653 0.66 0.403225
Target:  5'- cCGCuGCCAGcGGuGCCGGUgcgGCAGgugcGGCUg -3'
miRNA:   3'- aGUG-CGGUC-CU-CGGCCGa--CGUU----UCGG- -5'
30494 5' -58.3 NC_006548.1 + 29093 0.67 0.366959
Target:  5'- cUugGuCCuGGAGCU-GCUGCAGcucAGCCu -3'
miRNA:   3'- aGugC-GGuCCUCGGcCGACGUU---UCGG- -5'
30494 5' -58.3 NC_006548.1 + 28704 0.66 0.41264
Target:  5'- cUACGgCAaGGGCCgGGCUGCGuuGCg -3'
miRNA:   3'- aGUGCgGUcCUCGG-CCGACGUuuCGg -5'
30494 5' -58.3 NC_006548.1 + 28612 0.71 0.209078
Target:  5'- uUCACGCCAucAGgCGGCgaaGaCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUccUCgGCCGa--C-GUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 28126 0.68 0.32488
Target:  5'- --cCGCCAGccGCCuGCUGUGAGGCUg -3'
miRNA:   3'- aguGCGGUCcuCGGcCGACGUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.