miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30558 5' -57.2 NC_006548.1 + 28610 0.66 0.50713
Target:  5'- uCGCgGGUAGCgccgCGACc-UGgCCGGCg -3'
miRNA:   3'- -GCGgUCGUCGa---GCUGuuAUgGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 17064 0.66 0.50713
Target:  5'- aGUCGGCGGUccCGGagc-GCCCGGCUu -3'
miRNA:   3'- gCGGUCGUCGa-GCUguuaUGGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 4546 0.66 0.506066
Target:  5'- -aCCAGCGGCcgCGACAAgacgagccagcucUACCC-GCUg -3'
miRNA:   3'- gcGGUCGUCGa-GCUGUU-------------AUGGGcCGA- -5'
30558 5' -57.2 NC_006548.1 + 2374 0.66 0.496531
Target:  5'- gGCCGGCGGUUUucCAuccgAgCCGGCUg -3'
miRNA:   3'- gCGGUCGUCGAGcuGUua--UgGGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 35894 0.66 0.496531
Target:  5'- gGCCGGCGGCgugauaaCGACGacgaaggaGUAUCgGGCc -3'
miRNA:   3'- gCGGUCGUCGa------GCUGU--------UAUGGgCCGa -5'
30558 5' -57.2 NC_006548.1 + 20670 0.66 0.496531
Target:  5'- gCGCCAacGcCAGCUCGACGA-GCgCGaGCa -3'
miRNA:   3'- -GCGGU--C-GUCGAGCUGUUaUGgGC-CGa -5'
30558 5' -57.2 NC_006548.1 + 5325 0.66 0.495477
Target:  5'- gCGCCGG-GGCUCcACuucuucaAAUGCCUGGCg -3'
miRNA:   3'- -GCGGUCgUCGAGcUG-------UUAUGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 4211 0.66 0.486034
Target:  5'- aCGCCuguaucAGCGGUUCGAgGGUGuccuCCgCGGCa -3'
miRNA:   3'- -GCGG------UCGUCGAGCUgUUAU----GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 21430 0.66 0.486034
Target:  5'- gGCCGGCGGCagagucgCGGCAAccgcucGCCCcugGGCg -3'
miRNA:   3'- gCGGUCGUCGa------GCUGUUa-----UGGG---CCGa -5'
30558 5' -57.2 NC_006548.1 + 22165 0.66 0.475643
Target:  5'- -uCCAGCAGCUCcuGCAGgaagGCCauCGGCa -3'
miRNA:   3'- gcGGUCGUCGAGc-UGUUa---UGG--GCCGa -5'
30558 5' -57.2 NC_006548.1 + 5536 0.66 0.475643
Target:  5'- gGCUcgAGCGG-UCGACcugaGCCCGGCg -3'
miRNA:   3'- gCGG--UCGUCgAGCUGuua-UGGGCCGa -5'
30558 5' -57.2 NC_006548.1 + 31847 0.66 0.475643
Target:  5'- gCGCuCAGCAGCguUCGA-GGUACaUCGGCg -3'
miRNA:   3'- -GCG-GUCGUCG--AGCUgUUAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 18782 0.66 0.475643
Target:  5'- gGCCuGCGGCUgGGCGAggauCUgCGGCa -3'
miRNA:   3'- gCGGuCGUCGAgCUGUUau--GG-GCCGa -5'
30558 5' -57.2 NC_006548.1 + 1733 0.66 0.475643
Target:  5'- uCGCCAGCaAGCUCG-CAAUgagAUCCG-Cg -3'
miRNA:   3'- -GCGGUCG-UCGAGCuGUUA---UGGGCcGa -5'
30558 5' -57.2 NC_006548.1 + 22593 0.66 0.465364
Target:  5'- cCGCCGGCGGCU-----GUGCgCCGGUa -3'
miRNA:   3'- -GCGGUCGUCGAgcuguUAUG-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 36588 0.66 0.465364
Target:  5'- aCGCC-GCGGC-CGGCAccgcgGUGCUCGcGCg -3'
miRNA:   3'- -GCGGuCGUCGaGCUGU-----UAUGGGC-CGa -5'
30558 5' -57.2 NC_006548.1 + 34974 0.66 0.455201
Target:  5'- uGCCGGCAuuccCUCGGCAAcgaaCCGGUg -3'
miRNA:   3'- gCGGUCGUc---GAGCUGUUaug-GGCCGa -5'
30558 5' -57.2 NC_006548.1 + 24602 0.66 0.455201
Target:  5'- gGCgGGCAGCUCGAUc-UGCgaGGCc -3'
miRNA:   3'- gCGgUCGUCGAGCUGuuAUGggCCGa -5'
30558 5' -57.2 NC_006548.1 + 29657 0.66 0.455201
Target:  5'- uGCCAGCGGUgccggugCGGCAGgug-CGGCUg -3'
miRNA:   3'- gCGGUCGUCGa------GCUGUUauggGCCGA- -5'
30558 5' -57.2 NC_006548.1 + 18729 0.67 0.44516
Target:  5'- aCGCCuugGGCAGCccugCGGCGGUugucGCCaUGGCUu -3'
miRNA:   3'- -GCGG---UCGUCGa---GCUGUUA----UGG-GCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.