Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 6956 | 0.66 | 0.764955 |
Target: 5'- aUCGACaUCGg-GCGGAUcucuCCGGUGCg -3' miRNA: 3'- -AGCUG-AGCgaCGCUUAcuu-GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 10121 | 0.66 | 0.754281 |
Target: 5'- cUCGcGCUUGCUGCG--UGGGCCAaCGa -3' miRNA: 3'- -AGC-UGAGCGACGCuuACUUGGUcGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 32938 | 0.66 | 0.754281 |
Target: 5'- cUGAC-CGCgucgGCGAuucAACUGGCGCg -3' miRNA: 3'- aGCUGaGCGa---CGCUuacUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 21815 | 0.66 | 0.754281 |
Target: 5'- gUCGAUaucCGcCUGCGGc---ACCGGCGCg -3' miRNA: 3'- -AGCUGa--GC-GACGCUuacuUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 17582 | 0.66 | 0.754281 |
Target: 5'- --uGCUUGcCUGCucGAUGAGCguGCGCa -3' miRNA: 3'- agcUGAGC-GACGc-UUACUUGguCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31923 | 0.66 | 0.753206 |
Target: 5'- -gGACUCGaucaCGAcgGAACCgacaccuGGCGCg -3' miRNA: 3'- agCUGAGCgac-GCUuaCUUGG-------UCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33660 | 0.66 | 0.743472 |
Target: 5'- gCGACgUCGCU-CGGccGGAcaacggugcCCAGCGCg -3' miRNA: 3'- aGCUG-AGCGAcGCUuaCUU---------GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29657 | 0.66 | 0.743472 |
Target: 5'- -aGACUgGCUGCGGcucccUGAAUggCAGcCGCa -3' miRNA: 3'- agCUGAgCGACGCUu----ACUUG--GUC-GCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 6401 | 0.66 | 0.743472 |
Target: 5'- uUCGACUCGaacuUGCGcucGAUGAuguuCCgGGCGUu -3' miRNA: 3'- -AGCUGAGCg---ACGC---UUACUu---GG-UCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 32469 | 0.66 | 0.743472 |
Target: 5'- cCGugUCGa--CGGAUGGACCGccgguaguggacGCGCg -3' miRNA: 3'- aGCugAGCgacGCUUACUUGGU------------CGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 17880 | 0.66 | 0.736928 |
Target: 5'- gUCGGCgcgauuugccccggCGCUGaCGAA-GGACCGGuCGUu -3' miRNA: 3'- -AGCUGa-------------GCGAC-GCUUaCUUGGUC-GCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29634 | 0.66 | 0.732542 |
Target: 5'- -gGGCUCGCaggUGCuGGUGccgcuGCCAGCGg -3' miRNA: 3'- agCUGAGCG---ACGcUUACu----UGGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31492 | 0.66 | 0.732542 |
Target: 5'- aUUGGCUCGCUcaacaagcGCGGAgucGAAUaCAGCGg -3' miRNA: 3'- -AGCUGAGCGA--------CGCUUa--CUUG-GUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36605 | 0.67 | 0.707009 |
Target: 5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3' miRNA: 3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 17200 | 0.67 | 0.699147 |
Target: 5'- cCGGCcCGUUGgcugacCGAGUGGAacuuccCCGGCGCg -3' miRNA: 3'- aGCUGaGCGAC------GCUUACUU------GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 14086 | 0.67 | 0.687857 |
Target: 5'- --aGCUCGCgGCGGAUcu-CCAGCGg -3' miRNA: 3'- agcUGAGCGaCGCUUAcuuGGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 20537 | 0.67 | 0.687857 |
Target: 5'- cCG-C-CGCUGCGGAaGAGCCgcAGgGCa -3' miRNA: 3'- aGCuGaGCGACGCUUaCUUGG--UCgCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33594 | 0.67 | 0.687857 |
Target: 5'- uUCaGCUCGCUGaCGucgagGAugCGGCGg -3' miRNA: 3'- -AGcUGAGCGAC-GCuua--CUugGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 30598 | 0.67 | 0.676509 |
Target: 5'- gCGGC-CGUUgGCGAA-GAACCAGUaggGCa -3' miRNA: 3'- aGCUGaGCGA-CGCUUaCUUGGUCG---CG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 853 | 0.67 | 0.676509 |
Target: 5'- gCGGCUCGCuUGCuGGgcuGUGGuuGCCAGCccagGCg -3' miRNA: 3'- aGCUGAGCG-ACG-CU---UACU--UGGUCG----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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