miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 5' -52.9 NC_006548.1 + 6956 0.66 0.764955
Target:  5'- aUCGACaUCGg-GCGGAUcucuCCGGUGCg -3'
miRNA:   3'- -AGCUG-AGCgaCGCUUAcuu-GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32938 0.66 0.754281
Target:  5'- cUGAC-CGCgucgGCGAuucAACUGGCGCg -3'
miRNA:   3'- aGCUGaGCGa---CGCUuacUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 10121 0.66 0.754281
Target:  5'- cUCGcGCUUGCUGCG--UGGGCCAaCGa -3'
miRNA:   3'- -AGC-UGAGCGACGCuuACUUGGUcGCg -5'
30573 5' -52.9 NC_006548.1 + 21815 0.66 0.754281
Target:  5'- gUCGAUaucCGcCUGCGGc---ACCGGCGCg -3'
miRNA:   3'- -AGCUGa--GC-GACGCUuacuUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17582 0.66 0.754281
Target:  5'- --uGCUUGcCUGCucGAUGAGCguGCGCa -3'
miRNA:   3'- agcUGAGC-GACGc-UUACUUGguCGCG- -5'
30573 5' -52.9 NC_006548.1 + 31923 0.66 0.753206
Target:  5'- -gGACUCGaucaCGAcgGAACCgacaccuGGCGCg -3'
miRNA:   3'- agCUGAGCgac-GCUuaCUUGG-------UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32469 0.66 0.743472
Target:  5'- cCGugUCGa--CGGAUGGACCGccgguaguggacGCGCg -3'
miRNA:   3'- aGCugAGCgacGCUUACUUGGU------------CGCG- -5'
30573 5' -52.9 NC_006548.1 + 6401 0.66 0.743472
Target:  5'- uUCGACUCGaacuUGCGcucGAUGAuguuCCgGGCGUu -3'
miRNA:   3'- -AGCUGAGCg---ACGC---UUACUu---GG-UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 29657 0.66 0.743472
Target:  5'- -aGACUgGCUGCGGcucccUGAAUggCAGcCGCa -3'
miRNA:   3'- agCUGAgCGACGCUu----ACUUG--GUC-GCG- -5'
30573 5' -52.9 NC_006548.1 + 33660 0.66 0.743472
Target:  5'- gCGACgUCGCU-CGGccGGAcaacggugcCCAGCGCg -3'
miRNA:   3'- aGCUG-AGCGAcGCUuaCUU---------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17880 0.66 0.736928
Target:  5'- gUCGGCgcgauuugccccggCGCUGaCGAA-GGACCGGuCGUu -3'
miRNA:   3'- -AGCUGa-------------GCGAC-GCUUaCUUGGUC-GCG- -5'
30573 5' -52.9 NC_006548.1 + 29634 0.66 0.732542
Target:  5'- -gGGCUCGCaggUGCuGGUGccgcuGCCAGCGg -3'
miRNA:   3'- agCUGAGCG---ACGcUUACu----UGGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 31492 0.66 0.732542
Target:  5'- aUUGGCUCGCUcaacaagcGCGGAgucGAAUaCAGCGg -3'
miRNA:   3'- -AGCUGAGCGA--------CGCUUa--CUUG-GUCGCg -5'
30573 5' -52.9 NC_006548.1 + 36605 0.67 0.707009
Target:  5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3'
miRNA:   3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 17200 0.67 0.699147
Target:  5'- cCGGCcCGUUGgcugacCGAGUGGAacuuccCCGGCGCg -3'
miRNA:   3'- aGCUGaGCGAC------GCUUACUU------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 33594 0.67 0.687857
Target:  5'- uUCaGCUCGCUGaCGucgagGAugCGGCGg -3'
miRNA:   3'- -AGcUGAGCGAC-GCuua--CUugGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 20537 0.67 0.687857
Target:  5'- cCG-C-CGCUGCGGAaGAGCCgcAGgGCa -3'
miRNA:   3'- aGCuGaGCGACGCUUaCUUGG--UCgCG- -5'
30573 5' -52.9 NC_006548.1 + 14086 0.67 0.687857
Target:  5'- --aGCUCGCgGCGGAUcu-CCAGCGg -3'
miRNA:   3'- agcUGAGCGaCGCUUAcuuGGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 30598 0.67 0.676509
Target:  5'- gCGGC-CGUUgGCGAA-GAACCAGUaggGCa -3'
miRNA:   3'- aGCUGaGCGA-CGCUUaCUUGGUCG---CG- -5'
30573 5' -52.9 NC_006548.1 + 35260 0.67 0.676509
Target:  5'- cUCGACUgGCgGCGAugGUGGgcggccugguACCuGCGUu -3'
miRNA:   3'- -AGCUGAgCGaCGCU--UACU----------UGGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.