miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30720 5' -61.2 NC_006552.1 + 60159 0.66 0.512331
Target:  5'- cGGCagaUCGCCGgccaGCacuuccGCCGGAucCGCCCa -3'
miRNA:   3'- -CCG---AGUGGCg---CGcua---CGGCCU--GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 44460 0.66 0.512331
Target:  5'- aGCaacugCGCUGC-CGgcGCCGGcagACGCCCc -3'
miRNA:   3'- cCGa----GUGGCGcGCuaCGGCC---UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 22404 0.66 0.512331
Target:  5'- cGCUgAUgCGCGCGGUGCUucgcuGACGgCCg -3'
miRNA:   3'- cCGAgUG-GCGCGCUACGGc----CUGCgGG- -5'
30720 5' -61.2 NC_006552.1 + 20362 0.66 0.512331
Target:  5'- uGGCUUuCCGCGUGGaagCGGGCGaCCUc -3'
miRNA:   3'- -CCGAGuGGCGCGCUacgGCCUGC-GGG- -5'
30720 5' -61.2 NC_006552.1 + 49338 0.66 0.501549
Target:  5'- aGC-CGCUGCGCGAcgcucgcaaccgcUGCaa-GCGCCCa -3'
miRNA:   3'- cCGaGUGGCGCGCU-------------ACGgccUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 10758 0.66 0.492802
Target:  5'- cGCU-GCUGCGCGGUGCUcaGGgcaugcagauugGCGCCg -3'
miRNA:   3'- cCGAgUGGCGCGCUACGG--CC------------UGCGGg -5'
30720 5' -61.2 NC_006552.1 + 41133 0.66 0.483166
Target:  5'- cGGUcCugCGCGaUGAUGCCGcaGCGCUg -3'
miRNA:   3'- -CCGaGugGCGC-GCUACGGCc-UGCGGg -5'
30720 5' -61.2 NC_006552.1 + 62992 0.66 0.483166
Target:  5'- cGGCggaccugCGCCGC-CaGGUGuuGGAgaaaauggcCGCCCa -3'
miRNA:   3'- -CCGa------GUGGCGcG-CUACggCCU---------GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 68 0.66 0.483166
Target:  5'- cGCUCAaCGUGCGcgGCaUGGuuguaugcCGCCCg -3'
miRNA:   3'- cCGAGUgGCGCGCuaCG-GCCu-------GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 15194 0.66 0.473622
Target:  5'- aGGUcCACgGCcuugaUGGUGCCGGuCGCCUu -3'
miRNA:   3'- -CCGaGUGgCGc----GCUACGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 15725 0.66 0.472673
Target:  5'- cGCUCACCGaCGCGcugcAUGUagccggcauccggCGGugGCgCg -3'
miRNA:   3'- cCGAGUGGC-GCGC----UACG-------------GCCugCGgG- -5'
30720 5' -61.2 NC_006552.1 + 11640 0.66 0.464173
Target:  5'- cGCuugUCGCCGuCGCccUGCCaGAgGCCCa -3'
miRNA:   3'- cCG---AGUGGC-GCGcuACGGcCUgCGGG- -5'
30720 5' -61.2 NC_006552.1 + 24727 0.66 0.454824
Target:  5'- aGGC-CACCaGC-CGgcGCCGGGCcuGCUCg -3'
miRNA:   3'- -CCGaGUGG-CGcGCuaCGGCCUG--CGGG- -5'
30720 5' -61.2 NC_006552.1 + 29308 0.66 0.454824
Target:  5'- cGGCg-GCgGCGCaauguUGCCGGcCGCCa -3'
miRNA:   3'- -CCGagUGgCGCGcu---ACGGCCuGCGGg -5'
30720 5' -61.2 NC_006552.1 + 64649 0.66 0.454824
Target:  5'- uGUUCGCCGCGCc--GCCGGucaGCUUc -3'
miRNA:   3'- cCGAGUGGCGCGcuaCGGCCug-CGGG- -5'
30720 5' -61.2 NC_006552.1 + 5308 0.67 0.445578
Target:  5'- aGCU-ACCGCGCcaguugguGAUGCCGaACugGCCCg -3'
miRNA:   3'- cCGAgUGGCGCG--------CUACGGCcUG--CGGG- -5'
30720 5' -61.2 NC_006552.1 + 55810 0.67 0.442824
Target:  5'- cGC-CACCGCGCaggcacgccucgguGA-GCCGaugacccucGACGCCCu -3'
miRNA:   3'- cCGaGUGGCGCG--------------CUaCGGC---------CUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 7563 0.67 0.436437
Target:  5'- aGUUCGCCcuGCGCc-UGCgGGAUGCCg -3'
miRNA:   3'- cCGAGUGG--CGCGcuACGgCCUGCGGg -5'
30720 5' -61.2 NC_006552.1 + 21876 0.67 0.436437
Target:  5'- uGGUccagCACCaGCGCGGcaaUGGAUGCCCc -3'
miRNA:   3'- -CCGa---GUGG-CGCGCUacgGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 42714 0.67 0.40099
Target:  5'- gGGCggAUCGaacuGCGGUGCCGGuacgaacacuccGCGCUCg -3'
miRNA:   3'- -CCGagUGGCg---CGCUACGGCC------------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.